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ASE
2011
14 years 1 months ago
Alattin: mining alternative patterns for defect detection
Abstract To improve software quality, static or dynamic defect-detection tools accept programming rules as input and detect their violations in software as defects. As these progra...
Suresh Thummalapenta, Tao Xie
ASPLOS
2011
ACM
14 years 1 months ago
Hardware acceleration of transactional memory on commodity systems
The adoption of transactional memory is hindered by the high overhead of software transactional memory and the intrusive design changes required by previously proposed TM hardware...
Jared Casper, Tayo Oguntebi, Sungpack Hong, Nathan...
BMCBI
2011
14 years 1 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
BMCBI
2011
14 years 1 months ago
LAVA: An Open-Source Approach To Designing LAMP (Loop-Mediated Isothermal Amplification) DNA Signatures
Background: We developed an extendable open-source Loop-mediated isothermal AMPlification (LAMP) signature design program called LAVA (LAMP Assay Versatile Analysis). LAVA was cre...
Clinton Torres, Elizabeth A. Vitalis, Brian R. Bak...
NAR
2011
190views Computer Vision» more  NAR 2011»
14 years 9 days ago
New tools and methods for direct programmatic access to the dbSNP relational database
Genome-wide association studies often incorporate information from public biological databases in order to provide a biological reference for interpreting the results. The dbSNP d...
Scott F. Saccone, Jiaxi Quan, Gaurang Mehta, Rapha...