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    BIOINFORMATICS
    2016
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    Gapped sequence alignment using artificial neural networks: application to the MHC class I system
    10 years 2 months ago
    Gapped sequence alignment using artificial neural networks: application to the MHC class I system
    Download  www.cbs.dtu.dk
    Massimo Andreatta, Morten Nielsen
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    BIOINFORMATICS
    2016
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    Exploring peptide/MHC detachment processes using hierarchical natural move Monte Carlo
    10 years 2 months ago
    Exploring peptide/MHC detachment processes using hierarchical natural move Monte Carlo
    Download  bioinformatics.oxfordjournals.org
    Motivation: The binding between a peptide and a major histocompatibility complex (MHC) is one of the most important processes for the induction of an adaptive immune response. Man...
    Bernhard Knapp, Samuel Demharter, Charlotte M. Dea...
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    BIOINFORMATICS
    2016
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    MIEC-SVM: automated pipeline for protein peptide/ligand interaction prediction
    10 years 2 months ago
    MIEC-SVM: automated pipeline for protein peptide/ligand interaction prediction
    Download  wanglab.ucsd.edu
    Nan Li, Richard I. Ainsworth, Meixin Wu, Bo Ding, ...
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    BIOINFORMATICS
    2016
    90views more  BIOINFORMATICS 2016»
    Component-wise gradient boosting and false discovery control in survival analysis with high-dimensional covariates
    10 years 2 months ago
    Component-wise gradient boosting and false discovery control in survival analysis with high-dimensional covariates
    Download  dukespace.lib.duke.edu
    Kevin He, Yanming Li, Ji Zhu, Hongliang Liu, Jeffr...
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    BIOINFORMATICS
    2016
    86views more  BIOINFORMATICS 2016»
    Using de novo protein structure predictions to measure the quality of very large multiple sequence alignments
    10 years 2 months ago
    Using de novo protein structure predictions to measure the quality of very large multiple sequence alignments
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    Gearoid Fox, Fabian Sievers, Desmond G. Higgins
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    BIOINFORMATICS
    2016
    99views more  BIOINFORMATICS 2016»
    Identification of coupling DNA motif pairs on long-range chromatin interactions in human K562 cells
    10 years 2 months ago
    Identification of coupling DNA motif pairs on long-range chromatin interactions in human K562 cells
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    Ka-Chun Wong, Yue Li, Chengbin Peng
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    BIOINFORMATICS
    2016
    77views more  BIOINFORMATICS 2016»
    Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization
    10 years 2 months ago
    Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization
    Download  bioinformatics.oxfordjournals.org
    Motivation: Biological systems are complex and challenging to model and therefore model reuse is highly desirable. To promote model reuse, models should include both information a...
    Goksel Misirli, Matteo Cavaliere, William Waites, ...
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    BIOINFORMATICS
    2016
    85views more  BIOINFORMATICS 2016»
    cl-dash: rapid configuration and deployment of Hadoop clusters for bioinformatics research in the cloud
    10 years 2 months ago
    cl-dash: rapid configuration and deployment of Hadoop clusters for bioinformatics research in the cloud
    Download  bioinformatics.oxfordjournals.org
    Paul Hodor, Amandeep Chawla, Andrew Clark, Lauren ...
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    BIOINFORMATICS
    2016
    60views more  BIOINFORMATICS 2016»
    Inferred miRNA activity identifies miRNA-mediated regulatory networks underlying multiple cancers
    10 years 2 months ago
    Inferred miRNA activity identifies miRNA-mediated regulatory networks underlying multiple cancers
    Download  gene-quantification.org
    Eunjee Lee, Koichi Ito, Yong Zhao, Eric E. Schadt,...
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    BIOINFORMATICS
    2016
    109views more  BIOINFORMATICS 2016»
    NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles
    10 years 2 months ago
    NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles
    Download  bioinformatics.oxfordjournals.org
    Richard M. Leggett, Darren Heavens, Mario Caccamo,...
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