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BIBM
2009
IEEE
190views Bioinformatics» more  BIBM 2009»
13 years 18 days ago
A Fast, Semi-automatic Brain Structure Segmentation Algorithm for Magnetic Resonance Imaging
Abstract--Medical image segmentation has become an essential technique in clinical and research-oriented applications. Because manual segmentation methods are tedious, and fully au...
Kevin Karsch, Qing He, Ye Duan
BIBM
2009
IEEE
113views Bioinformatics» more  BIBM 2009»
13 years 6 months ago
Fast Motif Selection for Biological Sequences
—We consider the problem of identifying motifs, recurring or conserved patterns, in the sets of biological sequences. To solve this task, we present new deterministic and exact a...
Pavel P. Kuksa, Vladimir Pavlovic
BIBM
2009
IEEE
140views Bioinformatics» more  BIBM 2009»
13 years 6 months ago
A Protein-Protein Interaction Prediction Method Embracing Intra-protein Domain Cohesion Information
Recently, many computational methods for predicting protein-protein interaction (PPI) have been developed by utilizing domain-domain interaction or associated information. However...
Woo-Hyuk Jang, Suk Hoon Jung, Bo-ra Hyun, Dong-Soo...
BIBM
2009
IEEE
118views Bioinformatics» more  BIBM 2009»
13 years 6 months ago
Inexact Local Alignment Search over Suffix Arrays
We describe an algorithm for finding approximate seeds for DNA homology searches. In contrast to previous algorithms that use exact or spaced seeds, our approximate seeds may conta...
Mohammadreza Ghodsi, Mihai Pop
BIBM
2009
IEEE
164views Bioinformatics» more  BIBM 2009»
13 years 7 months ago
Differential Predictive Modeling for Racial Disparities in Breast Cancer
The primary objective of disparities research is to model the differences across multiple groups and identify the groups that behave significantly different from each other. Indep...
Indranil Palit, Chandan K. Reddy, Kendra L. Schwar...
BIBM
2009
IEEE
156views Bioinformatics» more  BIBM 2009»
13 years 7 months ago
Bayesian Classifier for Anchored Protein Sorting Discovery
—A typical cell has a size of only 10 µm while it contains about a billion proteins. Transportation of these proteins from their synthesis sites to their target locations within...
Fan Zhang, Jianjun Hu
BIBM
2009
IEEE
183views Bioinformatics» more  BIBM 2009»
13 years 7 months ago
Modeling Protein Interaction Networks with Answer Set Programming
—In this paper we propose the use of answer set programming (ASP) to model protein interaction networks. We argue that this declarative formalism rivals the popular boolean netwo...
Timur Fayruzov, Martine De Cock, Chris Cornelis, D...
BIBM
2009
IEEE
172views Bioinformatics» more  BIBM 2009»
13 years 7 months ago
Identifying Gene Signatures from Cancer Progression Data Using Ordinal Analysis
—A comprehensive understanding of cancer progression may shed light on genetic and molecular mechanisms of oncogenesis, and it may provide much needed information for effective d...
Yoon Soo Pyon, Jing Li