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    BIOINFORMATICS
    2012
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    NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment
    13 years 10 months ago
    NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment
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    Rogan Carr, Elhanan Borenstein
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    BIOINFORMATICS
    2012
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    Causal reasoning on biological networks: interpreting transcriptional changes
    13 years 10 months ago
    Causal reasoning on biological networks: interpreting transcriptional changes
    Download  www.bensidders.co.uk
    d Abstract) Leonid Chindelevitch1 , Daniel Ziemek1, , Ahmed Enayetallah2 , Ranjit Randhawa1 , Ben Sidders3 , Christoph Brockel4 , and Enoch Huang1 1 Computational Sciences Center o...
    Leonid Chindelevitch, Daniel Ziemek, Ahmed Enayeta...
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    BIOINFORMATICS
    2012
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    Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothel
    13 years 10 months ago
    Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothel
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    José Caldas, Nils Gehlenborg, Eeva Kettunen...
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    BIOINFORMATICS
    2012
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    MolClass: a web portal to interrogate diverse small molecule screen datasets with different computational models
    13 years 10 months ago
    MolClass: a web portal to interrogate diverse small molecule screen datasets with different computational models
    Download  bioinformatics.oxfordjournals.org
    Summary: The MolClass toolkit and data portal generates computational models from user-defined small molecule datasets based on structural features identified in hit and non-hit m...
    Jan Wildenhain, Nicholas FitzGerald, Mike Tyers
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    BIOINFORMATICS
    2012
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    The sva package for removing batch effects and other unwanted variation in high-throughput experiments
    13 years 10 months ago
    The sva package for removing batch effects and other unwanted variation in high-throughput experiments
    Download  www.biostat.jhsph.edu
    Jeffrey T. Leek, W. Evan Johnson, Hilary S. Parker...
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    BIOINFORMATICS
    2012
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    Genome-scale analysis of interaction dynamics reveals organization of biological networks
    13 years 10 months ago
    Genome-scale analysis of interaction dynamics reveals organization of biological networks
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    Jishnu Das, Jaaved Mohammed, Haiyuan Yu
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    BIOINFORMATICS
    2012
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    Approximate probabilistic analysis of biopathway dynamics
    13 years 10 months ago
    Approximate probabilistic analysis of biopathway dynamics
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    Bing Liu 0013, Andrei Hagiescu, Sucheendra K. Pala...
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    BIOINFORMATICS
    2012
    266views Distributed And Parallel Com...» more  BIOINFORMATICS 2012»
    CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human
    13 years 10 months ago
    CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human
    Download  liulab.dfci.harvard.edu
    Bo Qin, Meng Zhou, Ying Ge, Len Taing, Tao Liu, Qi...
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    BIOINFORMATICS
    2012
    207views Distributed And Parallel Com...» more  BIOINFORMATICS 2012»
    Predicting kinase substrates using conservation of local motif density
    13 years 10 months ago
    Predicting kinase substrates using conservation of local motif density
    Download  www.moseslab.csb.utoronto.ca
    Andy C. W. Lai, Alex N. Nguyen Ba, Alan M. Moses
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    BIOINFORMATICS
    2012
    246views Distributed And Parallel Com...» more  BIOINFORMATICS 2012»
    Predicting relapse prior to transplantation in chronic myeloid leukemia by integrating expert knowledge and expression data
    13 years 10 months ago
    Predicting relapse prior to transplantation in chronic myeloid leukemia by integrating expert knowledge and expression data
    Download  www.stat.washington.edu
    Ka Yee Yeung, T. A. Gooley, A. Zhang, Adrian E. Ra...
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