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    BMCBI
    2005
    143views more  BMCBI 2005»
    Evaluation of BioCreAtIvE assessment of task 2
    13 years 5 months ago
    Evaluation of BioCreAtIvE assessment of task 2
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    Background: Molecular Biology accumulated substantial amounts of data concerning functions of genes and proteins. Information relating to functional descriptions is generally extr...
    Christian Blaschke, Eduardo Andrés Le&oacut...
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    BMCBI
    2005
    153views more  BMCBI 2005»
    Learning Statistical Models for Annotating Proteins with Function Information using Biomedical Text
    13 years 5 months ago
    Learning Statistical Models for Annotating Proteins with Function Information using Biomedical Text
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    Background: The BioCreative text mining evaluation investigated the application of text mining methods to the task of automatically extracting information from text in biomedical ...
    Soumya Ray, Mark Craven
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    BMCBI
    2005
    93views more  BMCBI 2005»
    Identifying gene and protein mentions in text using conditional random fields
    13 years 5 months ago
    Identifying gene and protein mentions in text using conditional random fields
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    Ryan T. McDonald, Fernando Pereira
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    BMCBI
    2005
    122views more  BMCBI 2005»
    A neural strategy for the inference of SH3 domain-peptide interaction specificity
    13 years 5 months ago
    A neural strategy for the inference of SH3 domain-peptide interaction specificity
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    Background: The SH3 domain family is one of the most representative and widely studied cases of so-called Peptide Recognition Modules (PRM). The polyproline II motif PxxP that gen...
    Enrico Ferraro, Allegra Via, Gabriele Ausiello, Ma...
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    BMCBI
    2005
    96views more  BMCBI 2005»
    Overview of BioCreAtIvE task 1B: normalized gene lists
    13 years 5 months ago
    Overview of BioCreAtIvE task 1B: normalized gene lists
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    Background: Our goal in BioCreAtIve has been to assess the state of the art in text mining, with emphasis on applications that reflect real biological applications, e.g., the cura...
    Lynette Hirschman, Marc E. Colosimo, Alexander A. ...
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    BMCBI
    2005
    102views more  BMCBI 2005»
    BioCreAtIvE Task1A: entity identification with a stochastic tagger
    13 years 5 months ago
    BioCreAtIvE Task1A: entity identification with a stochastic tagger
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    Background: Our approach to Task 1A was inspired by Tanabe and Wilbur's ABGene system [1,2]. Like Tanabe and Wilbur, we approached the problem as one of part-of-speech taggin...
    Shuhei Kinoshita, K. Bretonnel Cohen, Philip V. Og...
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    BMCBI
    2005
    103views more  BMCBI 2005»
    MicroGen: a MIAME compliant web system for microarray experiment information and workflow management
    13 years 5 months ago
    MicroGen: a MIAME compliant web system for microarray experiment information and workflow management
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    Background: Improvements of bio-nano-technologies and biomolecular techniques have led to increasing production of high-throughput experimental data. Spotted cDNA microarray is on...
    Sarah Burgarella, Dario Cattaneo, Francesco Pincir...
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    BMCBI
    2005
    126views more  BMCBI 2005»
    HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms
    13 years 5 months ago
    HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms
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    Background: The application of high throughput approaches to the identification of protein interactions has offered for the first time a glimpse of the global interactome of some ...
    Maria Persico, Arnaud Ceol, Caius Gavrila, Robert ...
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    BMCBI
    2005
    125views more  BMCBI 2005»
    A simple approach for protein name identification: prospects and limits
    13 years 5 months ago
    A simple approach for protein name identification: prospects and limits
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    Background: Significant parts of biological knowledge are available only as unstructured text in articles of biomedical journals. By automatically identifying gene and gene produc...
    Katrin Fundel, Daniel Güttler, Ralf Zimmer, J...
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    BMCBI
    2005
    132views more  BMCBI 2005»
    CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis
    13 years 5 months ago
    CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis
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    Background: Protein-protein, protein-DNA and protein-RNA interactions are of central importance in biological systems. Quadrapole Time-of-flight (Q-TOF) mass spectrometry is a sen...
    Yong Tang, Yingfeng Chen, Cheryl F. Lichti, Roger ...
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