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    88
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    BMCBI
    2007
    141views more  BMCBI 2007»
    On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common
    15 years 24 days ago
    On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common
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    Background: The lysine, threonine, and methionine biosynthetic pathways share the three initial enzymatic steps, which are referred to as the Common Pathway (CP). In Escherichia c...
    Marco Fondi, Matteo Brilli, Renato Fani
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    115
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    BMCBI
    2007
    247views more  BMCBI 2007»
    A survey of DNA motif finding algorithms
    15 years 24 days ago
    A survey of DNA motif finding algorithms
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    Background: Unraveling the mechanisms that regulate gene expression is a major challenge in biology. An important task in this challenge is to identify regulatory elements, especi...
    Modan K. Das, Ho-Kwok Dai
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    BMCBI
    2007
    102views more  BMCBI 2007»
    The MEPS server for identifying protein conformational epitopes
    15 years 24 days ago
    The MEPS server for identifying protein conformational epitopes
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    Tiziana Castrignanò, Paolo D'Onorio De Meo,...
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    86
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    BMCBI
    2007
    178views more  BMCBI 2007»
    SVM clustering
    15 years 24 days ago
    SVM clustering
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    Background: Support Vector Machines (SVMs) provide a powerful method for classification (supervised learning). Use of SVMs for clustering (unsupervised learning) is now being cons...
    Stephen Winters-Hilt, Sam Merat
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    BMCBI
    2007
    180views more  BMCBI 2007»
    Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data
    15 years 24 days ago
    Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data
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    Background: The Affymetrix™ technology is nowadays a well-established method for the analysis of gene expression profiles in cancer research studies. However, changes in gene ex...
    Davide Rambaldi, Barbara Felice, Viviane Praz, Phi...
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    BMCBI
    2007
    99views more  BMCBI 2007»
    Towards validating the hypothesis of phylogenetic profiling
    15 years 24 days ago
    Towards validating the hypothesis of phylogenetic profiling
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    Background: As the number of fully sequenced genome increases, the need is greater for bioinformatics to predict or annotate genes of a newly sequenced genome. Ever since Eisenber...
    Raja Loganantharaj, Mazen Atwi
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    83
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    BMCBI
    2007
    100views more  BMCBI 2007»
    Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics
    15 years 24 days ago
    Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics
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    Rita Casadio, Manuela Helmer-Citterich, Graziano P...
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    103
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    BMCBI
    2007
    139views more  BMCBI 2007»
    Significance analysis of microarray transcript levels in time series experiments
    15 years 24 days ago
    Significance analysis of microarray transcript levels in time series experiments
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    Background: Microarray time series studies are essential to understand the dynamics of molecular events. In order to limit the analysis to those genes that change expression over ...
    Barbara Di Camillo, Gianna Toffolo, Sreekumaran K....
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    116
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    BMCBI
    2007
    121views more  BMCBI 2007»
    e-Science and biological pathway semantics
    15 years 24 days ago
    e-Science and biological pathway semantics
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    Background: The development of e-Science presents a major set of opportunities and challenges for the future progress of biological and life scientific research. Major new tools a...
    Joanne S. Luciano, Robert D. Stevens
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    97
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    BMCBI
    2007
    91views more  BMCBI 2007»
    Graphs in molecular biology
    15 years 24 days ago
    Graphs in molecular biology
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    Graph theoretical concepts are useful for the description and analysis of interactions and
    Wolfgang Huber, Vincent J. Carey, Li Long, Seth Fa...
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