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JIB
2007
119views more  JIB 2007»
15 years 17 days ago
VINEdb: a data warehouse for integration and interactive exploration of life science data
Control of cell proliferation, differentiation, activation and cell removal is crucial for the development and existence of multi-cellular organisms. Apoptosis, or programmed cell...
Sridhar Hariharaputran, Thoralf Töpel, Bj&oum...
TCS
2008
15 years 17 days ago
GemCell: A generic platform for modeling multi-cellular biological systems
The mass and complexity of biological information requires computer-aided simulation and analysis to help scientists achieve understanding and guide experimentation. Although livi...
Hila Amir-Kroll, Avital Sadot, Irun R. Cohen, Davi...
ALIFE
2005
15 years 18 days ago
A Gene Network Model for Developing Cell Lineages
Biological development is a remarkably complex process. A single cell, in an appropriate environment, contains sufficient information to generate a variety of differentiated cell ...
Nicholas Geard, Janet Wiles
SIAMSC
2008
97views more  SIAMSC 2008»
15 years 18 days ago
Long-Time Simulations on High Resolution Meshes to Model Calcium Waves in a Heart Cell
Abstract. A model for the flow of calcium in an atrial heart cell is given by a system of timedependent reaction-diffusion equations coupled by non-linear reaction terms. Calcium i...
Matthias K. Gobbert
116
Voted
JMLR
2006
96views more  JMLR 2006»
15 years 19 days ago
A Hierarchy of Support Vector Machines for Pattern Detection
We introduce a computational design for pattern detection based on a tree-structured network of support vector machines (SVMs). An SVM is associated with each cell in a recursive ...
Hichem Sahbi, Donald Geman
125
Voted
IJHIS
2006
94views more  IJHIS 2006»
15 years 20 days ago
A new fine-grained evolutionary algorithm based on cellular learning automata
In this paper, a new evolutionary computing model, called CLA-EC, is proposed. This model is a combination of a model called cellular learning automata (CLA) and the evolutionary ...
Reza Rastegar, Mohammad Reza Meybodi, Arash Hariri
108
Voted
BMCBI
2007
202views more  BMCBI 2007»
15 years 21 days ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...
77
Voted
COMBINATORICS
2006
112views more  COMBINATORICS 2006»
15 years 22 days ago
Latin Squares with Forbidden Entries
An n
Jonathan Cutler, Lars-Daniel Ohman
96
Voted
BMCBI
2006
118views more  BMCBI 2006»
15 years 22 days ago
A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images
Background: Knowledge of the subcellular location of a protein is critical to understanding how that protein works in a cell. This location is frequently determined by the interpr...
Shann-Ching Chen, Robert F. Murphy
115
Voted
APIN
2006
136views more  APIN 2006»
15 years 22 days ago
Cell modeling with reusable agent-based formalisms
Biologists are building increasingly complex models and simulations of cells and other biological entities, and are looking at alternatives to traditional representations. Making ...
Ken Webb, Tony White