109views more  SIVP 2010»
12 years 9 months ago
System profiles in content-based image indexing and retrieval
In this paper, a novel study on system profiles and adaptation of parameters for end-users of content-based indexingandretrieval(CBIR)applicationsarepresented.The main objective of...
Esin Guldogan, Moncef Gabbouj
111views more  NAR 2010»
12 years 9 months ago
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
JASPAR ( is the leading open-access database of matrix profiles describing the DNA-binding patterns of transcription factors (TFs) and other proteins int...
Elodie Portales-Casamar, Supat Thongjuea, Andrew T...
13 years 20 days ago
Interweaving Public User Profiles on the Web
While browsing the Web, providing profile information in social networking services, or tagging pictures, users leave a plethora of traces. In this paper, we analyze the nature of ...
Fabian Abel, Nicola Henze, Eelco Herder, Daniel Kr...
156views Bioinformatics» more  BIBM 2010»
13 years 25 days ago
Truncation of protein sequences for fast profile alignment with application to subcellular localization
We have recently found that the computation time of homology-based subcellular localization can be substantially reduced by aligning profiles up to the cleavage site positions of s...
Man-Wai Mak, Wei Wang, Sun-Yuan Kung
137views more  IJNSEC 2008»
13 years 2 months ago
Baseline Profile Stability for Network Anomaly Detection
Network attacks are commonplace in the Internet. One of the defense mechanisms against the network attacks is using a baseline profile established during normal operation to detec...
Yoohwan Kim, Ju-Yeon Jo, Kyunghee Kim Suh
154views more  BMCBI 2007»
13 years 2 months ago
h-Profile plots for the discovery and exploration of patterns in gene expression data with an application to time course data
Background: An ever increasing number of techniques are being used to find genes with similar profiles from microarray studies. Visualization of gene expression profiles can aid t...
Yvonne E. Pittelkow, Susan R. Wilson
128views more  BMCBI 2006»
13 years 2 months ago
Comparative assessment of performance and genome dependence among phylogenetic profiling methods
Background: The rapidly increasing speed with which genome sequence data can be generated will be accompanied by an exponential increase in the number of sequenced eukaryotes. Wit...
Evan S. Snitkin, Adam M. Gustafson, Joseph C. Mell...
186views more  DEBU 2008»
13 years 2 months ago
A Survey of Collaborative Recommendation and the Robustness of Model-Based Algorithms
The open nature of collaborative recommender systems allows attackers who inject biased profile data to have a significant impact on the recommendations produced. Standard memory-...
Jeff J. Sandvig, Bamshad Mobasher, Robin D. Burke
140views more  BMCBI 2007»
13 years 2 months ago
Prediction potential of candidate biomarker sets identified and validated on gene expression data from multiple datasets
Background: Independently derived expression profiles of the same biological condition often have few genes in common. In this study, we created populations of expression profiles...
Michael Gormley, William Dampier, Adam Ertel, Bilg...
85views more  BMCBI 2010»
13 years 2 months ago
Robust test method for time-course microarray experiments
Background: In a time-course microarray experiment, the expression level for each gene is observed across a number of time-points in order to characterize the temporal trajectorie...
Insuk Sohn, Kouros Owzar, Stephen L. George, Sujon...