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    94
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    2004
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    Modeling Cellular Processes with Variational Bayesian Cooperative Vector Quantizer
    15 years 2 months ago
    Modeling Cellular Processes with Variational Bayesian Cooperative Vector Quantizer
    Download  www.cs.pitt.edu
    Gene expression of a cell is controlled by sophisticated cellular processes. The capability of inferring the states of these cellular processes would provide insight into the mech...
    Xinghua Lu, Milos Hauskrecht, Roger S. Day
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    86
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    2004
    91views Applied Computing» more  PSB 2004»
    Motif Discovery in Heterogeneous Sequence Data
    15 years 2 months ago
    Motif Discovery in Heterogeneous Sequence Data
    Download  www.cs.washington.edu
    This paper introduces the first integrated algorithm designed to discover novel motifs in heterogeneous sequence data, which is comprised of coregulated genes from a single genome...
    Amol Prakash, Mathieu Blanchette, Saurabh Sinha, M...
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    58
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    2004
    92views Applied Computing» more  PSB 2004»
    Geometric Analysis of Cross-Linkability for Protein Fold Discrimination
    15 years 2 months ago
    Geometric Analysis of Cross-Linkability for Protein Fold Discrimination
    Download  helix-web.stanford.edu
    Shobha Potluri, Aly Azeem Khan, A. Kuzminykh, Janu...
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    69
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    2004
    66views Applied Computing» more  PSB 2004»
    Exploring Bias in the Protein Data Bank Using Contrast Classifiers
    15 years 2 months ago
    Exploring Bias in the Protein Data Bank Using Contrast Classifiers
    Download  helix-web.stanford.edu
    Kang Peng, Zoran Obradovic, Slobodan Vucetic
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    83
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    2004
    102views Applied Computing» more  PSB 2004»
    Kernel-Based Data Fusion and Its Application to Protein Function Prediction in Yeast
    15 years 2 months ago
    Kernel-Based Data Fusion and Its Application to Protein Function Prediction in Yeast
    Download  helix-web.stanford.edu
    Gert R. G. Lanckriet, Minghua Deng, Nello Cristian...
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    75
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    2004
    80views Applied Computing» more  PSB 2004»
    The Compositional Structure of Gene Ontology Terms
    15 years 2 months ago
    The Compositional Structure of Gene Ontology Terms
    Download  helix-web.stanford.edu
    Philip V. Ogren, K. Bretonnel Cohen, George Acquaa...
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    57
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    2004
    54views Applied Computing» more  PSB 2004»
    Inferring Gene Regulatory Networks from Raw Data: A Molecular Epistemics Approach
    15 years 2 months ago
    Inferring Gene Regulatory Networks from Raw Data: A Molecular Epistemics Approach
    Download  helix-web.stanford.edu
    D. A. Kightley, Navin Chandra, K. O. Elliston
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    93
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    2004
    89views Applied Computing» more  PSB 2004»
    An Evidence Ontology for Use in Pathway/Genome Databases
    15 years 2 months ago
    An Evidence Ontology for Use in Pathway/Genome Databases
    Download  www.ai.sri.com
    An important emerging need in Model Organism Databases (MODs) and other bioinformatics databases (DBs) is that of capturing the scientific evidence that supports the information wi...
    Peter D. Karp, Suzanne M. Paley, Cynthia J. Kriege...
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    57
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    2004
    68views Applied Computing» more  PSB 2004»
    Detection of Novel Splice Forms in Human and Mouse Using Cross-Species Approach
    15 years 2 months ago
    Detection of Novel Splice Forms in Human and Mouse Using Cross-Species Approach
    Download  helix-web.stanford.edu
    Zhengyan Kan, John Castle, Jason M. Johnson, Nick ...
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    94
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    2004
    90views Applied Computing» more  PSB 2004»
    Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary Mixtures
    15 years 2 months ago
    Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary Mixtures
    Download  rana.lbl.gov
    ct The preferential conservation of transcription factor binding sites implies that non-coding sequence data from related species will prove a powerful asset to motif discovery. We...
    Alan M. Moses, Derek Y. Chiang, Michael B. Eisen
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