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81
Voted
PSB
2004
15 years 8 days ago
Modeling Cellular Processes with Variational Bayesian Cooperative Vector Quantizer
Gene expression of a cell is controlled by sophisticated cellular processes. The capability of inferring the states of these cellular processes would provide insight into the mech...
Xinghua Lu, Milos Hauskrecht, Roger S. Day
PSB
2004
15 years 8 days ago
Motif Discovery in Heterogeneous Sequence Data
This paper introduces the first integrated algorithm designed to discover novel motifs in heterogeneous sequence data, which is comprised of coregulated genes from a single genome...
Amol Prakash, Mathieu Blanchette, Saurabh Sinha, M...
50
Voted
PSB
2004
15 years 8 days ago
Geometric Analysis of Cross-Linkability for Protein Fold Discrimination
Shobha Potluri, Aly Azeem Khan, A. Kuzminykh, Janu...
59
Voted
PSB
2004
15 years 8 days ago
Exploring Bias in the Protein Data Bank Using Contrast Classifiers
Kang Peng, Zoran Obradovic, Slobodan Vucetic
66
Voted
PSB
2004
15 years 8 days ago
The Compositional Structure of Gene Ontology Terms
Philip V. Ogren, K. Bretonnel Cohen, George Acquaa...
81
Voted
PSB
2004
15 years 8 days ago
An Evidence Ontology for Use in Pathway/Genome Databases
An important emerging need in Model Organism Databases (MODs) and other bioinformatics databases (DBs) is that of capturing the scientific evidence that supports the information wi...
Peter D. Karp, Suzanne M. Paley, Cynthia J. Kriege...
50
Voted
PSB
2004
15 years 8 days ago
Detection of Novel Splice Forms in Human and Mouse Using Cross-Species Approach
Zhengyan Kan, John Castle, Jason M. Johnson, Nick ...
80
Voted
PSB
2004
15 years 8 days ago
Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary Mixtures
ct The preferential conservation of transcription factor binding sites implies that non-coding sequence data from related species will prove a powerful asset to motif discovery. We...
Alan M. Moses, Derek Y. Chiang, Michael B. Eisen