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PVLDB
2010
93views more  PVLDB 2010»
13 years 8 months ago
Distributed Threshold Querying of General Functions by a Difference of Monotonic Representation
The goal of a threshold query is to detect all objects whose score exceeds a given threshold. This type of query is used in many settings, such as data mining, event triggering, a...
Guy Sagy, Daniel Keren, Izchak Sharfman, Assaf Sch...
MTA
2007
141views more  MTA 2007»
13 years 9 months ago
Flexible integration of multimedia sub-queries with qualitative preferences
Complex multimedia queries, aiming to retrieve from large databases those objects that best match the query specification, are usually processed by splitting them into a set of m ...
Ilaria Bartolini, Paolo Ciaccia, Vincent Oria, M. ...
BMCBI
2005
104views more  BMCBI 2005»
13 years 10 months ago
Scoring functions for transcription factor binding site prediction
Background: Transcription factor binding site (TFBS) prediction is a difficult problem, which requires a good scoring function to discriminate between real binding sites and backg...
Markus T. Friberg, Peter von Rohr, Gaston H. Gonne...
BMCBI
2005
92views more  BMCBI 2005»
13 years 10 months ago
A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators
Background: Estimators of free energies are routinely used to judge the quality of protein structural models. As these estimators still present inaccuracies, they are frequently e...
Federico Fogolari, Silvio C. E. Tosatto, Giorgio C...
BMCBI
2007
114views more  BMCBI 2007»
13 years 10 months ago
Combination of scoring schemes for protein docking
Background: Docking algorithms are developed to predict in which orientation two proteins are likely to bind under natural conditions. The currently used methods usually consist o...
Philipp Heuser, Dietmar Schomburg
CVIU
2008
126views more  CVIU 2008»
13 years 10 months ago
Optimising dynamic graphical models for video content analysis
A key problem in video content analysis using dynamic graphical models is to learn a suitable model structure given some observed visual data. We propose a Completed Likelihood AI...
Tao Xiang, Shaogang Gong
BMCBI
2010
132views more  BMCBI 2010»
13 years 10 months ago
An interaction-motif-based scoring function for protein-ligand docking
Background: A good scoring function is essential for molecular docking computations. In conventional scoring functions, energy terms modeling pairwise interactions are cumulativel...
Zhong-Ru Xie, Ming-Jing Hwang
BMCBI
2010
112views more  BMCBI 2010»
13 years 10 months ago
Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design
Background: Empirical scoring functions have proven useful in protein structure modeling. Most such scoring functions depend on protein side chain conformations. However, backbone...
Andrew J. Bordner
ISMB
1996
13 years 11 months ago
Finding Genes in DNA Using Decision Trees and Dynamic Programming
This study demonstratesthe use of decision tree classifiers as the basis for a general gene-finding system. The system uses a dynamic programmingalgorithm that. finds the optimal ...
Steven Salzberg, Xin Chen, John Henderson, Kenneth...
34
Voted
SAT
2010
Springer
158views Hardware» more  SAT 2010»
14 years 2 months ago
Dynamic Scoring Functions with Variable Expressions: New SLS Methods for Solving SAT
Abstract. We introduce a new conceptual model for representing and designing Stochastic Local Search (SLS) algorithms for the propositional satisfiability problem (SAT). Our model...
Dave A. D. Tompkins, Holger H. Hoos