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WABI
2007
Springer
13 years 8 months ago
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity
Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc
WABI
2007
Springer
110views Bioinformatics» more  WABI 2007»
13 years 8 months ago
Haplotype Inference Via Hierarchical Genotype Parsing
The within-species genetic variation due to recombinations leads to a mosaic-like structure of DNA. This structure can be modeled, e.g. by parsing sample sequences of current DNA w...
Pasi Rastas, Esko Ukkonen
WABI
2007
Springer
157views Bioinformatics» more  WABI 2007»
13 years 8 months ago
Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation
Abstract. Parameter estimation of large bio-pathway models is an important and difficult problem. To reduce the prohibitive computational cost, one approach is to decompose a large...
Geoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S...
WABI
2007
Springer
13 years 8 months ago
Bringing Folding Pathways into Strand Pairing Prediction
Abstract. The topology of β-sheets is defined by the pattern of hydrogenbonded strand pairing. Therefore, predicting hydrogen bonded strand partners is a fundamental step towards...
Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka
WABI
2007
Springer
13 years 8 months ago
HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding
Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop,...
WABI
2007
Springer
102views Bioinformatics» more  WABI 2007»
13 years 8 months ago
Homology Search with Fragmented Nucleic Acid Sequence Patterns
The comprehensive annotation of non-coding RNAs in newly sequenced genomes is still a largely unsolved problem because many functional RNAs exhibit not only poorly conserved sequen...
Axel Mosig, Julian J.-L. Chen, Peter F. Stadler
WABI
2007
Springer
121views Bioinformatics» more  WABI 2007»
13 years 8 months ago
Seeded Tree Alignment and Planar Tanglegram Layout
The optimal transformation of one tree into another by means of elementary edit operations is an important algorithmic problem that has several interesting applications to computat...
Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabr...
WABI
2007
Springer
13 years 8 months ago
Shotgun Protein Sequencing
Although snake venom proteins have been proven instrumental in the design of blood clotting and cytostatic breast cancer drugs, the main method in use to sequence these unknown pr...
Pavel A. Pevzner
WABI
2007
Springer
133views Bioinformatics» more  WABI 2007»
13 years 8 months ago
RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound
Predicting the secondary structure of an RNA sequence is an important problem in structural bioinformatics. The general RNA folding problem, where the sequence to be folded may con...
Chunmei Liu, Yinglei Song, Louis W. Shapiro
WABI
2007
Springer
102views Bioinformatics» more  WABI 2007»
13 years 8 months ago
On-Line Viterbi Algorithm for Analysis of Long Biological Sequences
Rastislav Srámek, Brona Brejová, Tom...