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» A structural EM algorithm for phylogenetic inference
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RECOMB
2001
Springer
14 years 5 months ago
A structural EM algorithm for phylogenetic inference
Nir Friedman, Matan Ninio, Itsik Pe'er, Tal Pupko
IJDMB
2007
110views more  IJDMB 2007»
13 years 5 months ago
Transductive learning with EM algorithm to classify proteins based on phylogenetic profiles
: Phylogenetic profiles of proteins  strings of ones and zeros encoding respectively the presence and absence of proteins in a group of genomes  have recently been used to id...
Roger A. Craig, Li Liao
BMCBI
2008
124views more  BMCBI 2008»
13 years 5 months ago
Inferring modules of functionally interacting proteins using the Bond Energy Algorithm
Background: Non-homology based methods such as phylogenetic profiles are effective for predicting functional relationships between proteins with no considerable sequence or struct...
Ryosuke Watanabe, Enrique Morett, Edgar E. Vallejo
BIBE
2010
IEEE
181views Bioinformatics» more  BIBE 2010»
13 years 6 months ago
Multi Level Clustering of Phylogenetic Profiles
The prediction of gene function from genome sequences is one of the main issues in Bioinformatics. Most computational approaches are based on the similarity between sequences to in...
Fotis E. Psomopoulos, Pericles A. Mitkas
NIPS
1998
13 years 6 months ago
Approximate Learning of Dynamic Models
Inference is a key component in learning probabilistic models from partially observable data. When learning temporal models, each of the many inference phases requires a complete ...
Xavier Boyen, Daphne Koller