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BMCBI
2010
155views more  BMCBI 2010»
13 years 5 months ago
BISMA - Fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences
Background: Bisulfite sequencing is a popular method to analyze DNA methylation patterns at high resolution. A region of interest is targeted by PCR and about 20-50 subcloned DNA ...
Christian Rohde, Yingying Zhang, Richard Reinhardt...
DNA
2001
Springer
164views Bioinformatics» more  DNA 2001»
13 years 9 months ago
A Clause String DNA Algorithm for SAT
A DNA algorithm for SAT, the satisfiability of propositional formulae, is presented where the number of separation steps is given by the number of clauses of the instance. This re...
Vincenzo Manca, Claudio Zandron
CAD
2006
Springer
13 years 5 months ago
Laplace-Beltrami spectra as 'Shape-DNA' of surfaces and solids
This paper introduces a method to extract `Shape-DNA', a numerical fingerprint or signature, of any 2d or 3d manifold (surface or solid) by taking the eigenvalues (i.e. the s...
Martin Reuter, Franz-Erich Wolter, Niklas Peinecke
BMCBI
2006
91views more  BMCBI 2006»
13 years 5 months ago
Cheminformatics methods for novel nanopore analysis of HIV DNA termini
Background: Channel current feature extraction methods, using Hidden Markov Models (HMMs) have been designed for tracking individual-molecule conformational changes. This informat...
Stephen Winters-Hilt, Matthew Landry, Mark Akeson,...
ISMB
1997
13 years 6 months ago
Increasing Consensus Accuracy in DNA Fragment Assemblies by Incorporating Fluorescent Trace Representations
We present a new method for determining the consensus sequence in DNA fragment assemblies. The new method, Trace-Evidence, directly incorporates aligned ABI trace information into...
Carolyn F. Allex, Schuyler F. Baldwin, Jude W. Sha...