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» DNA Sequence Design by Dynamic Neighborhood Searches
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DNA
2006
Springer
112views Bioinformatics» more  DNA 2006»
13 years 8 months ago
DNA Sequence Design by Dynamic Neighborhood Searches
Suguru Kawashimo, Hirotaka Ono, Kunihiko Sadakane,...
ISMB
1996
13 years 6 months ago
Compact Encoding Strategies for DNA Sequence Similarity Search
Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
David J. States, Pankaj Agarwal
TCBB
2008
107views more  TCBB 2008»
13 years 4 months ago
Progressive Tree Neighborhood Applied to the Maximum Parsimony Problem
Abstract-- The Maximum Parsimony problem aims at reconstructing a phylogenetic tree from DNA sequences while minimizing the number of genetic transformations. To solve this NP-comp...
Adrien Goëffon, Jean-Michel Richer, Jin-Kao H...
BMCBI
2010
169views more  BMCBI 2010»
13 years 4 months ago
eCOMPAGT integrates mtDNA: import, validation and export of mitochondrial DNA profiles for population genetics, tumour dynamics
Background: Mitochondrial DNA (mtDNA) is widely being used for population genetics, forensic DNA fingerprinting and clinical disease association studies. The recent past has uncov...
Hansi Weißensteiner, Sebastian Schönher...
IPPS
2006
IEEE
13 years 10 months ago
FPGA based architecture for DNA sequence comparison and database search
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
Euripides Sotiriades, Christos Kozanitis, Apostolo...