64 search results - page 3 / 13 » Finding approximate tandem repeats in genomic sequences |
NAR
2007
13 years 5 months ago
2007
Clustered regularly interspaced short palindromic repeats (CRISPRs) constitute a particular family of tandem repeats found in a wide range of prokaryotic genomes (half of eubacter...
BCB
2010
13 years 18 days ago
2010
Growing sequencing and assembly efforts have been met by the advances in high throughput machines. However, the presence of massive amounts of repeats and transposons complicates ...
CPM
2001
Springer
13 years 10 months ago
2001
Springer
We present a solution for the following problem. Given two sequences X = x1x2 · · · xn and Y = y1y2 · · · ym, n ≤ m, find the best scoring alignment of X = Xk [i] vs Y ove...
JCB
2008
13 years 5 months ago
2008
A novel approach to the detection of genomic repeats is presented in this paper. The technique, dubbed SAGRI (Spectrum Assisted Genomic Repeat Identifier), is based on the spectru...
RECOMB
2010
Springer
13 years 3 months ago
2010
Springer
Chaining fragments is a crucial step in genome alignment. Existing chaining algorithms compute a maximum weighted chain with no overlaps allowed between adjacent fragments. In prac...