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FCCM
2005
IEEE
96views VLSI» more  FCCM 2005»
13 years 11 months ago
Preliminary Report: FPGA Acceleration of Molecular Dynamics Computations
Abstract: Molecular Dynamics (MD) is of central importance to computational chemistry and its myriad applications. Here we show that, at even a preliminary stage of development, MD...
Yongfeng Gu, Tom Van Court, Douglas DiSabello, Mar...
FCCM
2006
IEEE
119views VLSI» more  FCCM 2006»
13 years 11 months ago
Integrating FPGA Acceleration into the Protomol Molecular Dynamics Code: Preliminary Report
: We describe a new pipeline for computing non-bonded forces and its integration into the ProtoMol molecular dynamics (MD) code. There are several innovations: a novel interpolatio...
Yongfeng Gu, Tom Van Court, Martin C. Herbordt
FPL
2005
Springer
144views Hardware» more  FPL 2005»
13 years 10 months ago
Accelerating Molecular Dynamics Simulations With Configurable Circuits
Molecular Dynamics (MD) is of central importance to computational chemistry. Here we show that MD can be implemented efficiently on a COTS FPGA board, and that speedups from ¿½...
Yongfeng Gu, Tom Van Court, Martin C. Herbordt
FPL
2006
Springer
123views Hardware» more  FPL 2006»
13 years 9 months ago
Improved Interpolation and System Integration for FPGA-Based Molecular Dynamics Simulations
: FPGA-based acceleration of molecular dynamics (MD) has been the subject of several recent studies. Here we describe a new non-bonded force computation pipeline implemented on a 2...
Yongfeng Gu, Tom Van Court, Martin C. Herbordt
FPL
2009
Springer
162views Hardware» more  FPL 2009»
13 years 8 months ago
Efficient particle-pair filtering for acceleration of molecular dynamics simulation
The acceleration of molecular dynamics (MD) simulations using high performance reconfigurable computing (HPRC) has been much studied. Given the intense competition from multicore...
Matt Chiu, Martin C. Herbordt