BIBE
2007
IEEE
13 years 11 months ago
2007
IEEE
Network mapping is a convenient tool for comparing and exploring biological networks; it can be used for predicting unknown pathways, fast and meaningful searching of databases, a...
BIBE
2007
IEEE
13 years 11 months ago
2007
IEEE
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
BIBE
2007
IEEE
13 years 11 months ago
2007
IEEE
Systolic implementations of dynamic programming solutions that utilize a similarity matrix can achieve appreciable performance with both course- and fine-grain parallelization. A ...
BIBE
2007
IEEE
13 years 11 months ago
2007
IEEE
—Array-based comparative genomic hybridization (array CGH) is a highly efficient technique, allowing the simultaneous measurement of genomic DNA copy number at hundreds or thous...
BIBE
2007
IEEE
13 years 11 months ago
2007
IEEE
BIBE
2007
IEEE
13 years 11 months ago
2007
IEEE
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
BIBE
2007
IEEE
13 years 11 months ago
2007
IEEE
BIBE
2007
IEEE
13 years 11 months ago
2007
IEEE
— In this paper, we propose a system for finding partial positive and negative coregulated gene clusters in microarray data. Genes are clustered together if they show the same p...
BIBE
2007
IEEE
13 years 11 months ago
2007
IEEE
—The rapid burgeoning of available protein data makes the use of clustering within families of proteins increasingly important, the challenge is to identify subfamilies of evolut...
BIBE
2007
IEEE
13 years 11 months ago
2007
IEEE
Alternative splicing is a highly important process in many eukaryotic organisms, but surprisingly little is known about its regulation. Often, this process involves cis-regulatory ...