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BIBE
2007
IEEE
109views Bioinformatics» more  BIBE 2007»
13 years 11 months ago
Biomedical Literature Mining
Xiaohua Hu
BIOTECHNO
2008
IEEE
13 years 11 months ago
Mathematical Description of Biological Structures and Mechanisms
A new formalism and approach to describing cellular and molecular processes and structures is introduced, designed to support the creation of knowledge bases of molecular and cell...
H. Joel Jeffrey
BIOTECHNO
2008
IEEE
13 years 11 months ago
Combining Boundaries and Ratings from Multiple Observers for Predicting Lung Nodule Characteristics
We use the data collected by the Lung Image Database Consortium (LIDC) for modeling the radiologists’ nodule interpretations based on image content of the nodule by using decisi...
Ekarin Varutbangkul, Vesna Mitrovic, Daniela Stan ...
BIOTECHNO
2008
IEEE
13 years 11 months ago
Grouping Levels of Exposure with Same Observable Effects before Class Prediction in Toxicogenomics
—Gene expression profiling in toxicogenomics is often used to find molecular signature of toxicants. The range of doses chosen in toxicogenomics studies does not always represe...
Vincent Guillemot, Cathy Philippe, Arthur Tenenhau...
BIOTECHNO
2008
IEEE
13 years 11 months ago
Directional Invariance of Co-occurrence Matrices within the Liver
Co-occurrence matrices are one of three texture algorithms commonly used on Computed Tomography (CT) images. In this paper we analyze the directional invariance of Co-occurrence m...
Carl Philips, Daniel Li, Daniela Stan Raicu, Jacob...
BIOTECHNO
2008
IEEE
13 years 11 months ago
Exploiting Codon-Triplets Association for Genome Primary Structure Analysis
— The way evolution shapes the arrangement of synonymous codons within open reading frames (ORF) for fine tuning mRNA decoding efficiency is not yet understood. Since the ribosom...
José P. Lousado, Gabriela R. Moura, Manuel ...
BIBM
2008
IEEE
110views Bioinformatics» more  BIBM 2008»
13 years 11 months ago
Genome Alignments Using MPI-LAGAN
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Ruinan Zhang, Huzefa Rangwala, George Karypis
BIBM
2008
IEEE
107views Bioinformatics» more  BIBM 2008»
13 years 11 months ago
Multiway Clustering for Creating Biomedical Term Sets
We present an EM-based clustering method that can be used for constructing or augmenting ontologies such as MeSH. Our algorithm simultaneously clusters verbs and nouns using both ...
Vasileios Kandylas, Lyle H. Ungar, Ted Sandler, Sh...
BIBM
2008
IEEE
113views Bioinformatics» more  BIBM 2008»
13 years 11 months ago
Towards Site-Based Protein Functional Annotations
Abstract—The exact relationship between protein active centers and protein functions is unclear even after decades of intensive study. To improve the functional prediction abilit...
Seak Fei Lei, Jun Huan