RECOMB
2005
Springer
14 years 5 months ago
2005
Springer
Abstract. There is widespread interest in comparative genomics in determining if historically and/or functionally related genes are spatially clustered in the genome, and whether t...
RECOMB
2005
Springer
14 years 5 months ago
2005
Springer
Whether common ancestors of eukaryotes and prokaryotes had introns is one of the oldest unanswered questions in molecular evolution. Recently completed genome sequences have been u...
RECOMB
2005
Springer
14 years 5 months ago
2005
Springer
Abstract. In this paper, we study lower bound techniques for branchand-bound algorithms for maximum parsimony, with a focus on gene order data. We give a simple O(n3 ) time dynamic...
RECOMB
2005
Springer
14 years 5 months ago
2005
Springer
RECOMB
2006
Springer
14 years 5 months ago
2006
Springer
Abstract. Peptide mass fingerprinting is a technique to identify a protein from its fragment masses obtained by mass spectrometry after enzymatic digestion. Recently, much attentio...
RECOMB
2006
Springer
14 years 5 months ago
2006
Springer
Understanding how individual proteins are organized into complexes and pathways is a significant current challenge. We introduce new algorithms to infer protein complexes by combin...
RECOMB
2006
Springer
14 years 5 months ago
2006
Springer
Abstract. Identifying gene functional modules is an important step towards elucidating gene functions at a global scale. In this paper, we introduce a simple method to construct ge...
RECOMB
2006
Springer
14 years 5 months ago
2006
Springer
Abstract. Mapping intra-cellular signaling networks is a critical step in developing an understanding of and treatments for many devastating diseases. The predominant ways of disco...
RECOMB
2006
Springer
14 years 5 months ago
2006
Springer
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
RECOMB
2006
Springer
14 years 5 months ago
2006
Springer
mRNA molecules are folded in the cells and therefore many of their substrings may actually be inaccessible to protein and microRNA binding. The need to apply an accessability crite...