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BIBE
2007
IEEE
127views Bioinformatics» more  BIBE 2007»
13 years 9 months ago
Gene Selection via Matrix Factorization
The recent development of microarray gene expression techniques have made it possible to offer phenotype classification of many diseases. However, in gene expression data analysis...
Fei Wang, Tao Li
BIBE
2007
IEEE
120views Bioinformatics» more  BIBE 2007»
13 years 9 months ago
Quality Assessment of Affymetrix GeneChip Data using the EM Algorithm and a Naive Bayes Classifier
Recent research has demonstrated the utility of using supervised classification systems for automatic identification of low quality microarray data. However, this approach requires...
Brian E. Howard, Beate Sick, Imara Perera, Yang Ju...
BIBE
2007
IEEE
129views Bioinformatics» more  BIBE 2007»
13 years 9 months ago
Statistial Analysis of nucleosome occupancy and histone modification data
Abstract-- In eukaryotic cells, genomic DNAs wrap around beadlike molecules, called nucleosomes, so as to pack more compactly in the nucleus of the cell. The nucleosome is made up ...
Guo-Cheng Yuan, Jun S. Liu
BIBE
2007
IEEE
141views Bioinformatics» more  BIBE 2007»
13 years 9 months ago
Graph and Topological Structure Mining on Scientific Articles
In this paper, we investigate a new approach for literature mining. We use frequent subgraph mining, and its generalization topological structure mining, for finding interesting re...
Fan Wang, Ruoming Jin, Gagan Agrawal, Helen Piontk...
BIBE
2007
IEEE
159views Bioinformatics» more  BIBE 2007»
13 years 9 months ago
Non-negative Tensor Factorization Based on Alternating Large-scale Non-negativity-constrained Least Squares
Non-negative matrix factorization (NMF) and non-negative tensor factorization (NTF) have attracted much attention and have been successfully applied to numerous data analysis probl...
Hyunsoo Kim, Haesun Park, Lars Eldén
BIBE
2007
IEEE
208views Bioinformatics» more  BIBE 2007»
13 years 9 months ago
The GPU on biomedical image processing for color and phenotype analysis
The computational power and memory bandwidth of graphics processing units (GPUs) have turned them into attractive platforms for general-purpose applications. In this paper, we expl...
Antonio Ruiz, Manuel Ujaldon, Jose Antonio Andrade...
BIBE
2007
IEEE
121views Bioinformatics» more  BIBE 2007»
13 years 9 months ago
Tracing Lineage in Multi-version Scientific Databases
The critical need for better tracing of lineage in scientific databases is well known [6]. It is clear that performance is not an issue for most domain scientists
Mingwu Zhang, Daisuke Kihara, Sunil Prabhakar
BIBE
2007
IEEE
149views Bioinformatics» more  BIBE 2007»
13 years 9 months ago
XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes
Multi-state molecules and multi-component complexes are commonly involved in cellular signaling. Accounting for molecules that have multiple potential states, such as a protein tha...
Michael L. Blinov, Ion I. Moraru
BIBE
2007
IEEE
124views Bioinformatics» more  BIBE 2007»
13 years 11 months ago
Finding Cancer-Related Gene Combinations Using a Molecular Evolutionary Algorithm
—High-throughput data such as microarrays make it possible to investigate the molecular-level mechanism of cancer more efficiently. Computational methods boost the microarray ana...
Chan-Hoon Park, Soo-Jin Kim, Sun Kim, Dong-Yeon Ch...
BIBE
2007
IEEE
148views Bioinformatics» more  BIBE 2007»
13 years 11 months ago
A New Smoothing Model for Analyzing Array CGH Data
—Array based Comparative Genomic Hybridization (CGH) is a molecular cytogenetic method for the detection of chromosomal imbalances and it has been extensively used for studying c...
Nha Nguyen, Heng Huang, Soontorn Oraintara, An P. ...