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BMCBI
2007
168views more  BMCBI 2007»
13 years 4 months ago
Bayesian model-based inference of transcription factor activity
Background: In many approaches to the inference and modeling of regulatory interactions using microarray data, the expression of the gene coding for the transcription factor is co...
Simon Rogers, Raya Khanin, Mark Girolami
BMCBI
2007
95views more  BMCBI 2007»
13 years 4 months ago
Logical modelling and analysis of the budding yeast cell cycle
ent> <title> <p>Highlights from the Third International Society for Computational Biology (ISCB) Student Council Symposium at the Fifteenth Annual International Conf...
Adrien Fauré, Claudine Chaouiya, Andrea Cil...
BMCBI
2007
177views more  BMCBI 2007»
13 years 4 months ago
The BioPrompt-box: an ontology-based clustering tool for searching in biological databases
Background: High-throughput molecular biology provides new data at an incredible rate, so that the increase in the size of biological databanks is enormous and very rapid. This sc...
Claudio Corsi, Paolo Ferragina, Roberto Marangoni
BMCBI
2007
89views more  BMCBI 2007»
13 years 4 months ago
Highlights from the Third International Society for Computational Biology Student Council Symposium at the Fifteenth Annual Inte
In this meeting report we give an overview of the 3rd International Society for Computational Biology Student Council Symposium. Furthermore, we explain the role of the Student Co...
Nils Gehlenborg, Manuel Corpas, Sarath Chandra Jan...
BMCBI
2007
58views more  BMCBI 2007»
13 years 4 months ago
Framework for a Protein Ontology
Darren A. Natale, Cecilia N. Arighi, Winona C. Bar...
BMCBI
2007
106views more  BMCBI 2007»
13 years 4 months ago
Simultaneous identification of long similar substrings in large sets of sequences
Background: Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in...
Jürgen Kleffe, Friedrich Möller, Burghar...
BMCBI
2007
202views more  BMCBI 2007»
13 years 4 months ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...
BMCBI
2007
168views more  BMCBI 2007»
13 years 4 months ago
Advancing translational research with the Semantic Web
Background: A fundamental goal of the U.S. National Institute of Health (NIH) "Roadmap" is to strengthen Translational Research, defined as the movement of discoveries i...
Alan Ruttenberg, Tim Clark, William Bug, Matthias ...
BMCBI
2007
103views more  BMCBI 2007»
13 years 4 months ago
Systems biology approach for mapping the response of human urothelial cells to infection by Enterococcus faecalis
Background: To better understand the response of urinary epithelial (urothelial) cells to Enterococcus faecalis, a uropathogen that exhibits resistance to multiple antibiotics, a ...
Mikhail G. Dozmorov, Kimberly D. Kyker, Ricardo Sa...