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CSB
2004
IEEE
124views Bioinformatics» more  CSB 2004»
11 years 10 months ago
Multiple RNA Structure Alignment
RNA structures can be viewed as a kind of special strings with some characters bonded with each other. The question of aligning two RNA structures has been studied for a while, an...
Zhuozhi Wang, Kaizhong Zhang
CSB
2004
IEEE
126views Bioinformatics» more  CSB 2004»
11 years 10 months ago
Boosted PRIM with Application to Searching for Oncogenic Pathway of Lung Cancer
Boosted PRIM (Patient Rule Induction Method) is a new algorithm developed for two-class classification problems. PRIM is a variation of those Tree-Based methods ( [4] Ch9.3), seek...
Pei Wang, Young Kim, Jonathan R. Pollack, Robert T...
CSB
2004
IEEE
152views Bioinformatics» more  CSB 2004»
11 years 10 months ago
Comparative Analysis of Gene Sets in the Gene Ontology Space under the Multiple Hypothesis Testing Framework
The Gene Ontology (GO) resource can be used as a powerful tool to uncover the properties shared among, and specific to, a list of genes produced by high-throughput functional geno...
Sheng Zhong, Lu Tian, Cheng Li, Kai-Florian Storch...
CSB
2004
IEEE
117views Bioinformatics» more  CSB 2004»
11 years 10 months ago
PRUNER: Algorithms for Finding Monad Patterns in DNA Sequences
Ravi Vijaya Satya, Amar Mukherjee
CSB
2004
IEEE
120views Bioinformatics» more  CSB 2004»
11 years 10 months ago
Dynamic Algorithm for Inferring Qualitative Models of Gene Regulatory Networks
It is still an open problem to identify functional relations with o(N
Zheng Yun, Kwoh Chee Keong
CSB
2004
IEEE
116views Bioinformatics» more  CSB 2004»
11 years 10 months ago
In-Silico Prediction of Surface Residue Clusters for Enzyme-Substrate Specificity
One of the most remarkable properties of enzyme-substrate binding is the high substrate specificity among homologous enzymes. Identification of regions in enzymes that play an imp...
Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan...
CSB
2004
IEEE
11 years 10 months ago
MISAE: A New Approach for Regulatory Motif Extraction
The recognition of regulatory motifs of co-regulated genes is essential for understanding the regulatory mechanisms. However, the automatic extraction of regulatory motifs from a ...
Zhaohui Sun, Jingyi Yang, Jitender S. Deogun
CSB
2004
IEEE
152views Bioinformatics» more  CSB 2004»
11 years 10 months ago
EcMLST: An Online Database for Multi Locus Sequence Typing of Pathogenic Escherichia coli
In order to provide a portable and accurate typing system for the unambiguous characterization of pathogenic Escherichia coli isolates to the scientific community, we have constru...
Weihong Qi, David W. Lacher, Alyssa C. Bumbaugh, K...
CSB
2004
IEEE
256views Bioinformatics» more  CSB 2004»
11 years 10 months ago
SUPERCONTIGS: A Contig Scaffolding Tool
SUPERCONTIGS is a genome-finishing tool that orders, orients and groups contigs based on clone pair information and an alignment with a related genome. The program can be used in ...
Daniela Puiu
CSB
2004
IEEE
136views Bioinformatics» more  CSB 2004»
11 years 10 months ago
AZuRE, a Scalable System for Automated Term Disambiguation of Gene and Protein Names
Researchers, hindered by a lack of standard gene and protein-naming conventions, endure long, sometimes fruitless, literature searches. A system is described which is able to auto...
Raf M. Podowski, John G. Cleary, Nicholas T. Gonch...
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