CSB
2004
IEEE
13 years 8 months ago
2004
IEEE
One goal of the structural genomics initiative is the identification of new protein folds. Sequence-based structural homology prediction methods are an important means for priorit...
CSB
2004
IEEE
13 years 8 months ago
2004
IEEE
CSB
2004
IEEE
13 years 8 months ago
2004
IEEE
Advances in genome science have created a surge of data. These data critical to scientific discovery are made available in thousands of heterogeneous public resources. Each of the...
CSB
2004
IEEE
13 years 8 months ago
2004
IEEE
For the identification of novel proteins using MS/MS, de novo sequencing software computes one or several possible amino acid sequences (called sequence tags) for each MS/MS spect...
CSB
2004
IEEE
13 years 8 months ago
2004
IEEE
CSB
2004
IEEE
13 years 8 months ago
2004
IEEE
DNA-protein alignment algorithms can be used to discover coding sequences in a genomic sequence, if the corresponding protein derivatives are known. They can also be used to ident...
CSB
2004
IEEE
13 years 8 months ago
2004
IEEE
We describe a novel hardware architecture for genomic and proteomic sequence alignment which achieves a speed-up of two to three orders of magnitude over Smith-Waterman dynamic pr...
CSB
2004
IEEE
13 years 8 months ago
2004
IEEE
Feature selection and weighting are central problems in pattern recognition and instance-based learning. In this work, we discuss the challenges of constructing and weighting feat...
CSB
2004
IEEE
13 years 8 months ago
2004
IEEE
We propose derivative Boyer-Moore (d-BM), a new compressed pattern matching algorithm in DNA sequences. This algorithm is based on the BoyerMoore method, which is one of the most ...
CSB
2004
IEEE
13 years 8 months ago
2004
IEEE