IPPS
2006
IEEE
13 years 11 months ago
2006
IEEE
In this paper we describe a new approach for the well known problem in bioinformatics: Multiple Sequence Alignment (MSA). MSA is fundamental task as it represents an essential pla...
AINA
2006
IEEE
13 years 11 months ago
2006
IEEE
Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly impr...
LSSC
2007
Springer
13 years 11 months ago
2007
Springer
Abstract. Multiple sequence alignment is a key process in today’s biology, and finding a relevant alignment of several sequences is much more challenging than just optimizing so...
COCOA
2007
Springer
13 years 11 months ago
2007
Springer
Abstract. Multiple sequence alignment (MSA) is one of the most basic and central tasks for many studies in modern biology. In this paper, we present a new progressive alignment alg...
COCOA
2007
Springer
13 years 11 months ago
2007
Springer
Abstract. We present a branch-and-bound (bb) algorithm for the multiple sequence alignment problem (MSA), one of the most important problems in computational biology. The upper bou...
ICPP
2007
IEEE
13 years 11 months ago
2007
IEEE
Sequence alignment is a fundamental problem in the computational biology. Many alignment methods have been proposed in the literature, such as pair-wise sequence alignment (2SA), ...
CIBCB
2007
IEEE
13 years 11 months ago
2007
IEEE
Abstract— Multiple sequence alignment is an important problem in computational biology. A-star is an algorithm that can be used to find exact alignments. We present a simple mod...
CEC
2007
IEEE
13 years 11 months ago
2007
IEEE
Abstract This paper presents a new evolutionary method, namely, a Two Phase evolutionary algorithm for multiple sequence alignments. This method is composed of different types of e...
BIBM
2007
IEEE
13 years 11 months ago
2007
IEEE
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
ICNSC
2008
IEEE
13 years 11 months ago
2008
IEEE
— This paper presents an approach to the multiple sequence alignment (MSA) problem by applying genetic algorithms with a reserve selection mechanism. MSA is one of the most funda...