Sciweavers

Share
RECOMB
2012
Springer
7 years 9 months ago
Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising
We develop a novel and general approach to estimating the accuracy of protein multiple sequence alignments without knowledge of a reference alignment, and use our approach to addre...
Dan F. DeBlasio, Travis J. Wheeler, John D. Kececi...
NAR
2011
157views Computer Vision» more  NAR 2011»
8 years 9 months ago
PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database
We updated the plant transcription factor (TF) database to version 2.0 (PlantTFDB 2.0, http:// planttfdb.cbi.pku.edu.cn) which contains 53 319 putative TFs predicted from 49 speci...
He Zhang, Jinpu Jin, Liang Tang, Yi Zhao, Xiaochen...
NAR
2007
153views more  NAR 2007»
9 years 6 months ago
PROMALS web server for accurate multiple protein sequence alignments
Multiple sequence alignments are essential in homology inference, structure modeling, functional prediction and phylogenetic analysis. We developed a web server that constructs mu...
Jimin Pei, Bong-Hyun Kim, Ming Tang, Nick V. Grish...
NAR
2007
152views more  NAR 2007»
9 years 6 months ago
COMPASS server for remote homology inference
COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles f...
Ruslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V....
BMCBI
2004
141views more  BMCBI 2004»
9 years 6 months ago
Estimates of statistical significance for comparison of individual positions in multiple sequence alignments
Background: Profile-based analysis of multiple sequence alignments (MSA) allows for accurate comparison of protein families. Here, we address the problems of detecting statistical...
Ruslan Sadreyev, Nick V. Grishin
BMCBI
2004
96views more  BMCBI 2004»
9 years 6 months ago
Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides
Background: Computer programs for the generation of multiple sequence alignments such as "Clustal W" allow detection of regions that are most conserved among many sequen...
Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemt...
BMCBI
2004
200views more  BMCBI 2004»
9 years 6 months ago
ABC: software for interactive browsing of genomic multiple sequence alignment data
Background: Alignment and comparison of related genome sequences is a powerful method to identify regions likely to contain functional elements. Such analyses are data intensive, ...
Gregory M. Cooper, Senthil A. G. Singaravelu, Aren...
BMCBI
2005
132views more  BMCBI 2005»
9 years 6 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
NAR
2008
152views more  NAR 2008»
9 years 7 months ago
PROMALS3D web server for accurate multiple protein sequence and structure alignments
Multiple sequence alignments are essential in computational sequence and structural analysis, with applications in homology detection, structure modeling, function prediction and ...
Jimin Pei, Ming Tang, Nick V. Grishin
NAR
2008
103views more  NAR 2008»
9 years 7 months ago
The Generation Challenge Programme comparative plant stress-responsive gene catalogue
The Generation Challenge Programme (GCP; www.generationcp.org) has developed an online resource documenting stress-responsive genes comparatively across plant species. This public...
Samart Wanchana, Supat Thongjuea, Victor Jun M. Ul...
books