Sciweavers

NAR
2006
84views more  NAR 2006»
13 years 4 months ago
PHEPS: web-based pH-dependent Protein Electrostatics Server
PHEPS (pH-dependent Protein Electrostatics Server) is a web service for fast prediction and experiment planning support, as well as for correlation and analysis of experimentally ...
Alexander A. Kantardjiev, Boris P. Atanasov
NAR
2006
96views more  NAR 2006»
13 years 4 months ago
mtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences
The mitochondrial genome, contained in the subcellular mitochondrial network, encodes a small number of peptides pivotal for cellular energy production. Mitochondrialgenesarehighl...
Max Ingman, Ulf Gyllensten
NAR
2006
71views more  NAR 2006»
13 years 4 months ago
TSEMA: interactive prediction of protein pairings between interacting families
An entire family of methodologies for predicting protein interactions is based on the observed fact that families of interacting proteins tend to have similar phylogenetic trees d...
José M. G. Izarzugaza, David de Juan, Carle...
NAR
2006
84views more  NAR 2006»
13 years 4 months ago
Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleases
Individual zinc finger (ZF) domains that recognize DNA triplets with high specificity and affinity can be used to create designer transcription factors and nucleases that are spec...
Jeffrey G. Mandell, Carlos F. Barbas III
NAR
2006
75views more  NAR 2006»
13 years 4 months ago
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
The OrthoMCL database (http://orthomcl.cbil.upenn. edu) houses ortholog group predictions for 55 spe10 cies, including 16 bacterial and 4 archaeal genomes representing phylogeneti...
Feng Chen, Aaron J. Mackey, Christian J. Stoeckert...
NAR
2006
61views more  NAR 2006»
13 years 4 months ago
MAVL/StickWRLD: analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments
The increasing availability of structurally aligned protein families has made it possible to use statistical methods to discover regions of interpositional dependenciesof residue ...
Hatice Gulcin Ozer, William C. Ray
NAR
2006
62views more  NAR 2006»
13 years 4 months ago
siVirus: web-based antiviral siRNA design software for highly divergent viral sequences
siVirus (http://siVirus.RNAi.jp/) is a web-based online software system that provides efficient short interfering RNA (siRNA) design for antiviral RNA interference (RNAi). siVirus...
Yuki Naito, Kumiko Ui-Tei, Toru Nishikawa, Yutaka ...
NAR
2006
82views more  NAR 2006»
13 years 4 months ago
PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins
PROFtmb predicts transmembrane beta-barrel (TMB) proteins in Gram-negative bacteria. For each query protein, PROFtmb provides both a Z-value indicating that the protein actually c...
Henry R. Bigelow, Burkhard Rost
NAR
2006
110views more  NAR 2006»
13 years 4 months ago
EMAGE: a spatial database of gene expression patterns during mouse embryo development
EMAGE (http://genex.hgu.mrc.ac.uk/Emage/database) is a freely available, curated database of gene expression patterns generated by in situ techniques in the developing mouse embry...
Jeffrey H. Christiansen, Yiya Yang, Shanmugasundar...
NAR
2006
91views more  NAR 2006»
13 years 4 months ago
YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms
We present YOGY a web-based resource for orthologous proteins from nine eukaryotic organisms: Homo sapiens, Mus musculus, Rattus norvegicus, Arabidopsis thaliana, Drosophila melan...
Christopher J. Penkett, James A. Morris, Valerie W...