NAR 2006 | Sciweavers

23

NAR
2006

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WormBase: better software, richer content

13 years 4 months ago

WormBase (http://wormbase.org), the public database for genomics and biology of Caenorhabditis elegans, has been restructured for stronger performance and expanded for richer biol...

Erich M. Schwarz, Igor Antoshechkin, Carol Bastian...

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9

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NAR
2006

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SMART 5: domains in the context of genomes and networks

13 years 4 months ago

Download www.letunic.com

The Simple Modular Architecture Research Tool 10 (SMART) is an online resource (http://smart.embl. de/) used for protein domain identification and the analysis of protein domain a...

Ivica Letunic, Richard R. Copley, Birgit Pils, Ste...

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12

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NAR
2006

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ASD: a bioinformatics resource on alternative splicing

13 years 4 months ago

Download www.ebi.ac.uk

Alternative splicing is an important regulatory mechanism of mammalian gene expression. The alternative splicing database (ASD) consortium is systematically collecting and annotat...

Stefan Stamm, Jean-Jack M. Riethoven, Vincent Le T...

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9

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NAR
2006

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Panzea: a database and resource for molecular and functional diversity in the maize genome

13 years 4 months ago

Download www.panzea.org

Serving as a community resource, Panzea (http:// www.panzea.org) is the bioinformatics arm of the Molecular and Functional Diversity in the Maize Genome project. Maize, a classica...

Wei Zhao, Payan Canaran, Rebecca Jurkuta, Theresa ...

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4

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NAR
2006

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DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification

13 years 4 months ago

Download clavius.bc.edu

Fabrizio Ferrè, Peter Clote

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9

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NAR
2006

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MetaCyc: a multiorganism database of metabolic pathways and enzymes

13 years 4 months ago

Download www.ai.sri.com

Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Reb...

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13

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NAR
2006

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Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee

13 years 4 months ago

Download www.plantsciences.ucdavis.edu

Expresso is a multiple sequence alignment server that aligns sequences using structural information. The user only needs to provide sequences. The server runs BLAST to identify cl...

Fabrice Armougom, Sébastien Moretti, Olivie...

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13

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NAR
2006

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HHsenser: exhaustive transitive profile search using HMM-HMM comparison

13 years 4 months ago

Download www.eb.tuebingen.mpg.de

HHsenser is the first server to offer exhaustive intermediate profile searches, which it combines with pairwise comparison of hidden Markov models. Starting from a single protein ...

Johannes Söding, Michael Remmert, Andreas Bie...

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14

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NAR
2006

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AliWABA: alignment on the web through an A-Bruijn approach

13 years 4 months ago

Download www.cs.brown.edu

Multiple sequence alignment programs are an invaluable tool in computational biology. A-Bruijn Alignment (ABA) is a method for multiple sequence alignment that represents an align...

Neil C. Jones, Degui Zhi, Benjamin J. Raphael

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3

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NAR
2006

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WEGO: a web tool for plotting GO annotations

13 years 4 months ago