ALMOB 2006 - PDF Preprint Papers

ALMOB 2006

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ALMOB
2006

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A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons

13 years 6 months ago

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Background: An important challenge in eukaryotic gene prediction is accurate identification of alternatively spliced exons. Functional transcripts can go undetected in gene expres...

Jonathan E. Allen, Steven L. Salzberg

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Id	Views	Title	Status

1	155	A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons	claim
2	155	Refining motifs by improving information content scores using neighborhood profile search	claim
3	138	A combinatorial optimization approach for diverse motif finding applications	claim
4	138	An enhanced RNA alignment benchmark for sequence alignment programs	claim
5	135	P-value based visualization of codon usage data	claim
6	113	Inverse bifurcation analysis: application to simple gene systems	claim
7	110	Computing distribution of scale independent motifs in biological sequences	claim
8	110	New journal: Algorithms for Molecular Biology	claim
9	109	A novel functional module detection algorithm for protein-protein interaction networks	claim
10	106	Multiple sequence alignment with user-defined anchor points	claim
11	102	Mining, compressing and classifying with extensible motifs	claim
12	97	The approximability of the String Barcoding problem	claim
13	89	On the maximal cliques in c-max-tolerance graphs and their application in clustering molecular sequences	claim
14	86	Finding the region of pseudo-periodic tandem repeats in biological sequences	claim
15	86	Analysis of computational approaches for motif discovery	claim
16	81	Fast calculation of the quartet distance between trees of arbitrary degrees	claim
17	80	Effective p-value computations using Finite Markov Chain Imbedding (FMCI): application to local score and to pattern statistics	claim
18	80	Pattern statistics on Markov chains and sensitivity to parameter estimation	claim
19	62	EXMOTIF: efficient structured motif extraction	claim
20	61	Automatic layout and visualization of biclusters	claim
21	58	Reconstructing protein structure from solvent exposure using tabu search	claim
22	56	SMOTIF: efficient structured pattern and profile motif search	claim
23	47	Partition function and base pairing probabilities of RNA heterodimers	claim
24	40	Probability-based model of protein-protein interactions on biological timescales	claim

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