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RECOMB
2015
Springer
9 years 11 months ago
CRISPR Detection from Short Reads Using Partial Overlap Graphs
Clustered regularly interspaced short palindromic repeats (CRISPR) are structured regions in bacterial and archaeal genomes, which are part of an adaptive immune system against pha...
Ilan Ben-Bassat, Benny Chor
RECOMB
2015
Springer
9 years 11 months ago
Learning Microbial Interaction Networks from Metagenomic Count Data
Many microbes associate with higher eukaryotes and impact their vitality. In order to engineer microbiomes for host benefit, we must understand the rules of community assembly and...
Surojit Biswas, Meredith McDonald, Derek S. Lundbe...
226
Voted
RECOMB
2015
Springer
9 years 11 months ago
Locating a Tree in a Phylogenetic Network in Quadratic Time
A fundamental problem in the study of phylogenetic networks is how to determine whether a phylogenetic network displays a phylogenetic tree or not. We develop a quadratic-time alg...
Philippe Gambette, Andreas D. M. Gunawan, Anthony ...
226
Voted
RECOMB
2015
Springer
9 years 11 months ago
HapTree-X: An Integrative Bayesian Framework for Haplotype Reconstruction from Transcriptome and Genome Sequencing Data
Identifying phase information is biomedically important due to the association of complex haplotype effects, such as compound heterozygosity, with disease. As recent next-generat...
Emily Berger, Deniz Yörükoglu, Bonnie Be...
105
Voted
RE
2015
Springer
9 years 11 months ago
A descriptive study of Microsoft's threat modeling technique
Riccardo Scandariato, Kim Wuyts, Wouter Joosen