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83
Voted
CSB
2004
IEEE
117views Bioinformatics» more  CSB 2004»
15 years 7 months ago
Biclustering Gene-Feature Matrices for Statistically Significant Dense Patterns
Mehmet Koyutürk, Wojciech Szpankowski, Ananth...
117
Voted
CSB
2004
IEEE
15 years 7 months ago
Space-Conserving Optimal DNA-Protein Alignment
DNA-protein alignment algorithms can be used to discover coding sequences in a genomic sequence, if the corresponding protein derivatives are known. They can also be used to ident...
Pang Ko, Mahesh Narayanan, Anantharaman Kalyanaram...
98
Voted
CSB
2004
IEEE
123views Bioinformatics» more  CSB 2004»
15 years 7 months ago
A New Hardware Architecture for Genomic and Proteomic Sequence Alignment
We describe a novel hardware architecture for genomic and proteomic sequence alignment which achieves a speed-up of two to three orders of magnitude over Smith-Waterman dynamic pr...
Greg Knowles, Paul Gardner-Stephen
126
Voted
CSB
2004
IEEE
149views Bioinformatics» more  CSB 2004»
15 years 7 months ago
Weighting Features to Recognize 3D Patterns of Electron Density in X-Ray Protein Crystallography
Feature selection and weighting are central problems in pattern recognition and instance-based learning. In this work, we discuss the challenges of constructing and weighting feat...
Kreshna Gopal, Tod D. Romo, James C. Sacchettini, ...
129
Voted
CSB
2004
IEEE
177views Bioinformatics» more  CSB 2004»
15 years 7 months ago
Compressed Pattern Matching in DNA Sequences
We propose derivative Boyer-Moore (d-BM), a new compressed pattern matching algorithm in DNA sequences. This algorithm is based on the BoyerMoore method, which is one of the most ...
Lei Chen, Shiyong Lu, Jeffrey L. Ram