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CSB
2004
IEEE
256views Bioinformatics» more  CSB 2004»
13 years 10 months ago
SUPERCONTIGS: A Contig Scaffolding Tool
SUPERCONTIGS is a genome-finishing tool that orders, orients and groups contigs based on clone pair information and an alignment with a related genome. The program can be used in ...
Daniela Puiu
WOB
2004
233views Bioinformatics» more  WOB 2004»
13 years 7 months ago
Recent Advances in Gene Expression Data Clustering: A Case Study with Comparative Results
Several advanced techniques have been proposed for data clustering and many of them have been applied to gene expression data, with partial success. The high dimensionality and the...
George Barreto Bezerra, Geraldo M. A. Cança...
CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
13 years 10 months ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
BIBE
2004
IEEE
179views Bioinformatics» more  BIBE 2004»
13 years 10 months ago
Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study
This research explores the feasibility of semantic similarity approaches to supporting predictive tasks in functional genomics. It aims to establish potential relationships betwee...
Francisco Azuaje, Olivier Bodenreider
CSB
2004
IEEE
177views Bioinformatics» more  CSB 2004»
13 years 10 months ago
Compressed Pattern Matching in DNA Sequences
We propose derivative Boyer-Moore (d-BM), a new compressed pattern matching algorithm in DNA sequences. This algorithm is based on the BoyerMoore method, which is one of the most ...
Lei Chen, Shiyong Lu, Jeffrey L. Ram
Bioinformatics
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