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» A Framework for Molecular Biology Data Integration
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BMCBI
2010
164views more  BMCBI 2010»
14 years 9 months ago
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be...
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geer...
88
Voted
BMCBI
2007
185views more  BMCBI 2007»
14 years 9 months ago
GEDI: a user-friendly toolbox for analysis of large-scale gene expression data
Background: Several mathematical and statistical methods have been proposed in the last few years to analyze microarray data. Most of those methods involve complicated formulas, a...
André Fujita, João Ricardo Sato, Car...
ALMOB
2006
138views more  ALMOB 2006»
14 years 9 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
ICEIS
2003
IEEE
15 years 2 months ago
An XML View of the "World"
Abstract: The paper presents ”Any Input XML Output” (AIXO), a general and flexible software architecture for wrappers. The architecture has been designed to present data sourc...
Ezio Bartocci, Emanuela Merelli, Leonardo Mariani
RECOMB
2005
Springer
15 years 10 months ago
Likely Scenarios of Intron Evolution
Whether common ancestors of eukaryotes and prokaryotes had introns is one of the oldest unanswered questions in molecular evolution. Recently completed genome sequences have been u...
Miklós Csürös