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» A Machine-Learning Strategy for Protein Analysis
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SDM
2010
SIAM
181views Data Mining» more  SDM 2010»
14 years 7 months ago
Efficient Nonnegative Matrix Factorization with Random Projections
The recent years have witnessed a surge of interests in Nonnegative Matrix Factorization (NMF) in data mining and machine learning fields. Despite its elegant theory and empirical...
Fei Wang, Ping Li
LREC
2008
125views Education» more  LREC 2008»
14 years 11 months ago
Adaptation of Relation Extraction Rules to New Domains
This paper presents various strategies for improving the extraction performance of less prominent relations with the help of the rules learned for similar relations, for which lar...
Feiyu Xu, Hans Uszkoreit, Hong Li, Niko Felger
BMCBI
2004
177views more  BMCBI 2004»
14 years 9 months ago
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
Andrew F. Neuwald, Jun S. Liu
BMCBI
2008
100views more  BMCBI 2008»
14 years 10 months ago
PatternLab for proteomics: a tool for differential shotgun proteomics
Background: A goal of proteomics is to distinguish between states of a biological system by identifying protein expression differences. Liu et al. demonstrated a method to perform...
Paulo C. Carvalho, Juliana S. G. Fischer, Emily I....
BIRD
2008
Springer
131views Bioinformatics» more  BIRD 2008»
14 years 12 months ago
Identifying Subcellular Locations from Images of Unknown Resolution
Our group has previously used machine learning techniques to develop computational systems to automatically analyse fluorescence microscope images and classify the location of the ...
Luís Pedro Coelho, Robert F. Murphy