252 search results - page 28 / 51 » A Massively Parallel Architecture for Bioinformatics |
IPPS
2009
IEEE
15 years 4 months ago
2009
IEEE
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
EUROPAR
2008
Springer
14 years 11 months ago
2008
Springer
Over the last decade, Message Passing Interface (MPI) has become a very successful parallel programming environment for distributed memory architectures such as clusters. However, ...
IPPS
2006
IEEE
15 years 3 months ago
2006
IEEE
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
IPPS
2007
IEEE
15 years 4 months ago
2007
IEEE
DNA sequence alignment is a very important problem in bioinformatics. The algorithm proposed by Smith-Waterman (SW) is an exact method that obtains optimal local alignments in qua...
EUROPAR
2010
Springer
14 years 11 months ago
2010
Springer
Abstract. Performance of the on-chip cache is critical for processor. The multithread program model usually employed by on-chip many-core architectures may have effects on cache ac...