104 search results - page 4 / 21 » A Parameterized Algorithm for Protein Structure Alignment |
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RECOMB
2009
Springer
15 years 10 months ago
2009
Springer
Accurately aligning distant protein sequences is notoriously difficult. A recent approach to improving alignment accuracy is to use additional information such as predicted seconda...
AINA
2008
IEEE
15 years 4 months ago
2008
IEEE
The common-use gap penalty strategies, constant penalty and affine gap penalty, have been adopted in the traditional three-sequence alignment algorithm which considers the inserti...
ICML
2004
IEEE
15 years 10 months ago
2004
IEEE
In this paper, we present a graphical model for protein secondary structure prediction. This model extends segmental semi-Markov models (SSMM) to exploit multiple sequence alignme...
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BIOCOMP
2008
14 years 11 months ago
2008
Protein structure comparison is important for elucidation of evolutionary relationships, function and functionally important amino acid residues. We propose Geometric Invariant bas...
ICML
2007
IEEE
15 years 10 months ago
2007
IEEE
Structural alignments are the most widely used tools for comparing proteins with low sequence similarity. The main contribution of this paper is to derive various kernels on prote...