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ICSM
2007
IEEE
15 years 6 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
GECCO
2007
Springer
183views Optimization» more  GECCO 2007»
15 years 6 months ago
Screening the parameters affecting heuristic performance
This research screens the tuning parameters of a combinatorial optimization heuristic. Specifically, it presents a Design of Experiments (DOE) approach that uses a Fractional Fac...
Enda Ridge, Daniel Kudenko
GECCO
2007
Springer
201views Optimization» more  GECCO 2007»
15 years 6 months ago
A parallel framework for loopy belief propagation
There are many innovative proposals introduced in the literature under the evolutionary computation field, from which estimation of distribution algorithms (EDAs) is one of them....
Alexander Mendiburu, Roberto Santana, Jose Antonio...
GECCO
2007
Springer
192views Optimization» more  GECCO 2007»
15 years 6 months ago
On the runtime analysis of the 1-ANT ACO algorithm
The runtime analysis of randomized search heuristics is a growing field where, in the last two decades, many rigorous results have been obtained. These results, however, apply pa...
Benjamin Doerr, Frank Neumann, Dirk Sudholt, Carst...
WEA
2007
Springer
114views Algorithms» more  WEA 2007»
15 years 6 months ago
Improving Tree Search in Phylogenetic Reconstruction from Genome Rearrangement Data
Abstract. A major task in evolutionary biology is to determine the ancestral relationships among the known species, a process generally referred as phylogenetic reconstruction. In ...
Fei Ye, Yan Guo, Andrew Lawson, Jijun Tang