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» A Sensitive Sequence Comparison Method
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BMCBI
2005
149views more  BMCBI 2005»
14 years 11 months ago
The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional pre
Background: The PD-(D/E)XK nuclease superfamily, initially identified in type II restriction endonucleases and later in many enzymes involved in DNA recombination and repair, is o...
Jan Kosinski, Marcin Feder, Janusz M. Bujnicki
BMCBI
2005
121views more  BMCBI 2005»
14 years 11 months ago
Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data
Background: A critical step in processing oligonucleotide microarray data is combining the information in multiple probes to produce a single number that best captures the express...
Kerby Shedden, Wei Chen, Rork Kuick, Debashis Ghos...
BMCBI
2008
155views more  BMCBI 2008»
14 years 12 months ago
ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts
Background: Once a new genome is sequenced, one of the important questions is to determine the presence and absence of biological pathways. Analysis of biological pathways in a ge...
Kwangmin Choi, Sun Kim
BIOCOMP
2008
15 years 1 months ago
GIPSCo: A Method for Comparison of Protein Structures Based on Geometric Invariants
Protein structure comparison is important for elucidation of evolutionary relationships, function and functionally important amino acid residues. We propose Geometric Invariant bas...
Sandeep Deshmukh, Aniket Dalal, Pramod Wangikar
ICPPW
2005
IEEE
15 years 5 months ago
A Comparison of Two Methods for Building Astronomical Image Mosaics on a Grid
This paper compares two methods for running an application composed of a set of modules on a grid. The set of modules (collectively called Montage) generates large astronomical im...
Daniel S. Katz, Joseph C. Jacob, G. Bruce Berriman...