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GECCO
2007
Springer
211views Optimization» more  GECCO 2007»
15 years 3 months ago
An extremal optimization search method for the protein folding problem: the go-model example
The protein folding problem consists of predicting the functional (native) structure of the protein given its linear sequence of amino acids. Despite extensive progress made in un...
Alena Shmygelska
INEX
2009
Springer
15 years 2 months ago
Overview of the INEX 2009 Ad Hoc Track
This paper gives an overview of the INEX 2009 Ad Hoc Track. The main goals of the Ad Hoc Track were three-fold. The first goal was to investigate the impact of the collection scal...
Shlomo Geva, Jaap Kamps, Miro Lehtonen, Ralf Schen...
KDD
2010
ACM
277views Data Mining» more  KDD 2010»
15 years 1 months ago
Growing a tree in the forest: constructing folksonomies by integrating structured metadata
Many social Web sites allow users to annotate the content with descriptive metadata, such as tags, and more recently to organize content hierarchically. These types of structured ...
Anon Plangprasopchok, Kristina Lerman, Lise Getoor
ALMOB
2006
109views more  ALMOB 2006»
14 years 9 months ago
A novel functional module detection algorithm for protein-protein interaction networks
Background: The sparse connectivity of protein-protein interaction data sets makes identification of functional modules challenging. The purpose of this study is to critically eva...
Woochang Hwang, Young-Rae Cho, Aidong Zhang, Mural...
BMCBI
2007
216views more  BMCBI 2007»
14 years 9 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos