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» A learning algorithm for string assembly
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TCS
2008
13 years 6 months ago
Algorithms for subsequence combinatorics
A subsequence is obtained from a string by deleting any number of characters; thus in contrast to a substring, a subsequence is not necessarily a contiguous part of the string. Co...
Cees H. Elzinga, Sven Rahmann, Hui Wang
ECML
2007
Springer
14 years 13 days ago
Learning Balls of Strings with Correction Queries
When facing the question of learning languages in realistic settings, one has to tackle several problems that do not admit simple solutions. On the one hand, languages are usually...
Leonor Becerra-Bonache, Colin de la Higuera, Jean-...
WWW
2004
ACM
14 years 7 months ago
Dynamic assembly of learning objects
This paper describes one solution to the problem of how to select sequence, and link Web resources into a coherent, focused organization for instruction that addresses a user'...
Robert G. Farrell, Soyini D. Liburd, John C. Thoma...
BMCBI
2010
133views more  BMCBI 2010»
13 years 6 months ago
Improving de novo sequence assembly using machine learning and comparative genomics for overlap correction
Background: With the rapid expansion of DNA sequencing databases, it is now feasible to identify relevant information from prior sequencing projects and completed genomes and appl...
Lance E. Palmer, Mathäus Dejori, Randall A. B...
BICOB
2009
Springer
14 years 25 days ago
Assembly of Large Genomes from Paired Short Reads
The de novo assembly of genomes from high-throughput short reads is an active area of research. Several promising methods have been recently developed, with applicability mainly re...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...