Sciweavers

241 search results - page 24 / 49
» A polyhedral approach to RNA sequence structure alignment
Sort
View
ISBI
2006
IEEE
16 years 15 days ago
Nonuniform temporal alignment of slice sequences for four-dimensional imaging of cyclically deforming embryonic structures
The temporal alignment of nongated slice-sequences acquired at different axial positions in the living embryonic zebrafish heart permits the reconstruction of dynamic, three-dimen...
Michael Liebling, Julien Vermot, Arian S. Forouhar...
AINA
2006
IEEE
15 years 5 months ago
Partitioned optimization algorithms for multiple sequence alignment
Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly impr...
Yixin Chen, Yi Pan, Juan Chen, Wei Liu, Ling Chen
BMCBI
2008
123views more  BMCBI 2008»
14 years 12 months ago
Shape based indexing for faster search of RNA family databases
Background: Most non-coding RNA families exert their function by means of a conserved, common secondary structure. The Rfam data base contains more than five hundred structurally ...
Stefan Janssen, Jens Reeder, Robert Giegerich
SCFBM
2008
131views more  SCFBM 2008»
14 years 11 months ago
FASH: A web application for nucleotides sequence search
: FASH (Fourier Alignment Sequence Heuristics) is a web application, based on the Fast Fourier Transform, for finding remote homologs within a long nucleic acid sequence. Given a ...
Isana Veksler-Lublinsky, Danny Barash, Chai Avisar...
BMCBI
2008
136views more  BMCBI 2008»
14 years 12 months ago
An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptim
Background: RNAmute is an interactive Java application which, given an RNA sequence, calculates the secondary structure of all single point mutations and organizes them into categ...
Alexander Churkin, Danny Barash