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FPGA
2010
ACM
232views FPGA» more  FPGA 2010»
14 years 9 months ago
High-throughput bayesian computing machine with reconfigurable hardware
We use reconfigurable hardware to construct a high throughput Bayesian computing machine (BCM) capable of evaluating probabilistic networks with arbitrary DAG (directed acyclic gr...
Mingjie Lin, Ilia Lebedev, John Wawrzynek
IPPS
2007
IEEE
15 years 3 months ago
High Performance Database Searching with HMMer on FPGAs
1 Profile Hidden Markov Models (profile HMMs) are used as a popular bioinformatics tool for sensitive database searching, e.g. a set of not annotated protein sequences is compared...
Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt
PROCEDIA
2010
138views more  PROCEDIA 2010»
14 years 4 months ago
Using the reconfigurable massively parallel architecture COPACOBANA 5000 for applications in bioinformatics
Currently several computational problems require high processing power to handle huge amounts of data, although underlying core algorithms appear to be rather simple. Especially i...
Lars Wienbrandt, Stefan Baumgart, Jost Bissel, Car...
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SBCCI
2004
ACM
111views VLSI» more  SBCCI 2004»
15 years 3 months ago
A partial reconfigurable architecture for controllers based on Petri nets
Digital Control System in the industry has been used in most of the applications based on expensive Programmable Logical Controllers (PLC). These Systems are, in general, highly c...
Paulo Sérgio B. do Nascimento, Paulo Romero...
ASAP
2005
IEEE
169views Hardware» more  ASAP 2005»
15 years 3 months ago
Alleviating the Data Memory Bandwidth Bottleneck in Coarse-Grained Reconfigurable Arrays
It is widely known that parallel operation execution in multiprocessor systems generates a respective increase in memory accesses. Since the memory and bus subsystems provide a li...
Grigoris Dimitroulakos, Michalis D. Galanis, Costa...