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CSB
2005
IEEE
136views Bioinformatics» more  CSB 2005»
15 years 7 months ago
Whole Genome Phylogeny Based on Clustered Signature String Composition
Peptide compositions constructed out of whole sets of protein sequences can be used as species signatures for phylogenetic analysis. To account for point mutations, an amino acid ...
Xiaomeng Wu, Guohui Lin, Xiu-Feng Wan, Dong Xu
AUSAI
2008
Springer
15 years 3 months ago
Propositionalisation of Profile Hidden Markov Models for Biological Sequence Analysis
Hidden Markov Models are a widely used generative model for analysing sequence data. A variant, Profile Hidden Markov Models are a special case used in Bioinformatics to represent,...
Stefan Mutter, Bernhard Pfahringer, Geoffrey Holme...
BMCBI
2007
144views more  BMCBI 2007»
15 years 1 months ago
Accelerated search for biomolecular network models to interpret high-throughput experimental data
Background: The functions of human cells are carried out by biomolecular networks, which include proteins, genes, and regulatory sites within DNA that encode and control protein e...
Suman Datta, Bahrad A. Sokhansanj
ICIP
2000
IEEE
15 years 6 months ago
Model-Aided Coding: Using 3-D Scene Models in Motion-Compensated Video Coding
We show that traditional waveform-coding and 3-D modelbased coding are not competing alternatives but should be combined to support and complement each other. Both approaches are ...
Peter Eisert, Thomas Wiegand, Bernd Girod
ALMOB
2006
155views more  ALMOB 2006»
15 years 1 months ago
A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
Background: An important challenge in eukaryotic gene prediction is accurate identification of alternatively spliced exons. Functional transcripts can go undetected in gene expres...
Jonathan E. Allen, Steven L. Salzberg