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133
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BMCBI
2008
214views more  BMCBI 2008»
15 years 19 days ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
BMCBI
2007
144views more  BMCBI 2007»
15 years 15 days ago
Accelerated search for biomolecular network models to interpret high-throughput experimental data
Background: The functions of human cells are carried out by biomolecular networks, which include proteins, genes, and regulatory sites within DNA that encode and control protein e...
Suman Datta, Bahrad A. Sokhansanj
112
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FPGA
2009
ACM
273views FPGA» more  FPGA 2009»
15 years 7 months ago
A parallel/vectorized double-precision exponential core to accelerate computational science applications
Many natural processes exhibit exponential decay and, consequently, computational scientists make extensive use of e−x in computer simulation experiments. While it is common to ...
Robin Pottathuparambil, Ron Sass
119
Voted
CASES
2009
ACM
15 years 7 months ago
CGRA express: accelerating execution using dynamic operation fusion
Coarse-grained reconfigurable architectures (CGRAs) present an appealing hardware platform by providing programmability with the potential for high computation throughput, scalab...
Yongjun Park, Hyunchul Park, Scott A. Mahlke
89
Voted
IPPS
2008
IEEE
15 years 7 months ago
Massive supercomputing coping with heterogeneity of modern accelerators
Heterogeneous supercomputers with combined general purpose and accelerated CPUs promise to be the future major architecture due to their wideranging generality and superior perfor...
Toshio Endo, Satoshi Matsuoka