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BMCBI
2004
125views more  BMCBI 2004»
15 years 6 months ago
A fast algorithm for determining the best combination of local alignments to a query sequence
Background: Existing sequence alignment algorithms assume that similarities between DNA or amino acid sequences are linearly ordered. That is, stretches of similar nucleotides or ...
Gavin C. Conant, Andreas Wagner
PVLDB
2008
121views more  PVLDB 2008»
15 years 6 months ago
Type inference and type checking for queries on execution traces
This paper studies, for the first time, the management of type information for an important class of semi-structured data: nested DAGs (Directed Acyclic Graphs) that describe exec...
Daniel Deutch, Tova Milo
185
Voted
PVLDB
2010
174views more  PVLDB 2010»
15 years 5 months ago
x-RDF-3X: Fast Querying, High Update Rates, and Consistency for RDF Databases
The RDF data model is gaining importance for applications in computational biology, knowledge sharing, and social communities. Recent work on RDF engines has focused on scalable p...
Thomas Neumann, Gerhard Weikum
ESWS
2009
Springer
15 years 4 months ago
Applied Temporal RDF: Efficient Temporal Querying of RDF Data with SPARQL
Many applications operate on time-sensitive data. Some of these data are only valid for certain intervals (e.g., job-assignments, versions of software code), others describe tempor...
Jonas Tappolet, Abraham Bernstein
CORR
2010
Springer
130views Education» more  CORR 2010»
15 years 4 months ago
Ontology-based Queries over Cancer Data
The ever-increasing amount of data in biomedical research, and in cancer research in particular, needs to be managed to support efficient data access, exchange and integration. Exi...
Alejandra González Beltrán, Ben Tagg...