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BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
15 years 6 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
HPDC
2007
IEEE
15 years 6 months ago
Towards adaptive, scalable, and reliable resource provisioning for wsrf-compliant applications
Although WSRF (Web Services Resource Framework) and Java-based hosting environment have been successful in dealing with the heterogeneity of resources and the diversity of applica...
Eun-Kyu Byun, Jae-Wan Jang, Jin-Soo Kim
IEEEPACT
2007
IEEE
15 years 6 months ago
Performance Portable Optimizations for Loops Containing Communication Operations
Effective use of communication networks is critical to the performance and scalability of parallel applications. Partitioned Global Address Space languages like UPC bring the pro...
Costin Iancu, Wei Chen, Katherine A. Yelick
INFOCOM
2007
IEEE
15 years 6 months ago
TriBiCa: Trie Bitmap Content Analyzer for High-Speed Network Intrusion Detection
Abstract—Deep packet inspection (DPI) is often used in network intrusion detection and prevention systems (NIDPS), where incoming packet payloads are compared against known attac...
N. Sertac Artan, H. Jonathan Chao
ISCA
2007
IEEE
167views Hardware» more  ISCA 2007»
15 years 6 months ago
New cache designs for thwarting software cache-based side channel attacks
Software cache-based side channel attacks are a serious new class of threats for computers. Unlike physical side channel attacks that mostly target embedded cryptographic devices,...
Zhenghong Wang, Ruby B. Lee