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BMCBI
2008
116views more  BMCBI 2008»
14 years 9 months ago
Gene Ontology annotations: what they mean and where they come from
To address the challenges of information integration and retrieval, the computational genomics community increasingly has come to rely on the methodology of creating annotations o...
David P. Hill, Barry Smith, Monica S. McAndrews-Hi...
SIAMSC
2011
148views more  SIAMSC 2011»
14 years 4 months ago
Bootstrap AMG
We develop an algebraic multigrid (AMG) setup scheme based on the bootstrap framework for multiscale scientific computation. Our approach uses a weighted least squares definition...
Achi Brandt, James J. Brannick, K. Kahl, Irene Liv...
76
Voted
CDC
2009
IEEE
126views Control Systems» more  CDC 2009»
14 years 10 months ago
Reachability analysis for a class of Petri nets
In this paper, we study the reachability problem for the class of (strictly) monotone Petri nets that we define based on algebraic conditions. More specifically, given a (strictly)...
Yu Ru, Christoforos N. Hadjicostis
GECCO
2006
Springer
220views Optimization» more  GECCO 2006»
15 years 1 months ago
Comparing evolutionary algorithms on the problem of network inference
In this paper, we address the problem of finding gene regulatory networks from experimental DNA microarray data. We focus on the evaluation of the performance of different evoluti...
Christian Spieth, Rene Worzischek, Felix Streicher...
CORR
2010
Springer
174views Education» more  CORR 2010»
14 years 9 months ago
Hybrid Numerical Solution of the Chemical Master Equation
We present a numerical approximation technique for the analysis of continuous-time Markov chains that describe networks of biochemical reactions and play an important role in the ...
Thomas A. Henzinger, Maria Mateescu, Linar Mikeev,...