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» Algorithmically Independent Sequences
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CEC
2008
IEEE
16 years 23 days ago
Improved Particle Swarm Optimization with low-discrepancy sequences
— Quasirandom or low discrepancy sequences, such as the Van der Corput, Sobol, Faure, Halton (named after their inventors) etc. are less random than a pseudorandom number sequenc...
Millie Pant, Radha Thangaraj, Crina Grosan, Ajith ...
IPPS
2007
IEEE
16 years 17 days ago
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space
DNA sequence alignment is a very important problem in bioinformatics. The algorithm proposed by Smith-Waterman (SW) is an exact method that obtains optimal local alignments in qua...
Azzedine Boukerche, Jan Mendonca Correa, Alba Cris...
IBPRIA
2009
Springer
15 years 11 months ago
Variable Order Finite-Context Models in DNA Sequence Coding
Abstract. Being an essential key in biological research, the DNA sequences are often shared between researchers and digitally stored for future use. As these sequences grow in volu...
Daniel A. Martins, António J. R. Neves, Arm...
RECOMB
2009
Springer
16 years 6 months ago
Simultaneous Alignment and Folding of Protein Sequences
Abstract. Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding ...
Bonnie Berger, Charles W. O'Donnell, Jér&oc...
RECOMB
1997
Springer
15 years 10 months ago
Progressive multiple alignment with constraints
A progressive alignment algorithm produces a multi-alignment of a set of sequences by repeatedly aligning pairs of sequences and/or previously generated alignments. We describe a ...
Gene Myers, Sanford Selznick, Zheng Zhang 0004, We...