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» Algorithms for subsequence combinatorics
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156
Voted
IPL
2007
122views more  IPL 2007»
15 years 6 months ago
On the longest increasing subsequence of a circular list
The longest increasing circular subsequence (LICS) of a list is considered. A Monte-Carlo algorithm to compute it is given which has worst case execution time O(n3/2 log n) and st...
Michael H. Albert, Mike D. Atkinson, Doron Nussbau...
CSR
2006
Springer
15 years 10 months ago
Window Subsequence Problems for Compressed Texts
Given two strings (a text t of length n and a pattern p) and a natural number w, window subsequence problems consist in deciding whether p occurs as a subsequence of t and/or findi...
Patrick Cégielski, Irène Guessarian,...
SOFSEM
2010
Springer
16 years 3 months ago
Fast Arc-Annotated Subsequence Matching in Linear Space
An arc-annotated string is a string of characters, called bases, augmented with a set of pairs, called arcs, each connecting two bases. Given arc-annotated strings P and Q the arc-...
Philip Bille, Inge Li Gørtz
157
Voted
IPL
2006
67views more  IPL 2006»
15 years 6 months ago
A remark on the subsequence problem for arc-annotated sequences with pairwise nested arcs
The Arc-Preserving Subsequence (APS) problem appears in the comparison of RNA structures in computational biology. Given two arcannotated sequences of length n and m < n, APS a...
Peter Damaschke
CSR
2006
Springer
15 years 10 months ago
All Semi-local Longest Common Subsequences in Subquadratic Time
For two strings a, b of lengths m, n respectively, the longest common subsequence (LCS) problem consists in comparing a and b by computing the length of their LCS. In this paper, w...
Alexandre Tiskin