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» Algorithms for subsequence combinatorics
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IPL
2007
122views more  IPL 2007»
14 years 9 months ago
On the longest increasing subsequence of a circular list
The longest increasing circular subsequence (LICS) of a list is considered. A Monte-Carlo algorithm to compute it is given which has worst case execution time O(n3/2 log n) and st...
Michael H. Albert, Mike D. Atkinson, Doron Nussbau...
CSR
2006
Springer
15 years 1 months ago
Window Subsequence Problems for Compressed Texts
Given two strings (a text t of length n and a pattern p) and a natural number w, window subsequence problems consist in deciding whether p occurs as a subsequence of t and/or findi...
Patrick Cégielski, Irène Guessarian,...
SOFSEM
2010
Springer
15 years 6 months ago
Fast Arc-Annotated Subsequence Matching in Linear Space
An arc-annotated string is a string of characters, called bases, augmented with a set of pairs, called arcs, each connecting two bases. Given arc-annotated strings P and Q the arc-...
Philip Bille, Inge Li Gørtz
IPL
2006
67views more  IPL 2006»
14 years 9 months ago
A remark on the subsequence problem for arc-annotated sequences with pairwise nested arcs
The Arc-Preserving Subsequence (APS) problem appears in the comparison of RNA structures in computational biology. Given two arcannotated sequences of length n and m < n, APS a...
Peter Damaschke
CSR
2006
Springer
15 years 1 months ago
All Semi-local Longest Common Subsequences in Subquadratic Time
For two strings a, b of lengths m, n respectively, the longest common subsequence (LCS) problem consists in comparing a and b by computing the length of their LCS. In this paper, w...
Alexandre Tiskin