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NAR
2006
129views more  NAR 2006»
15 years 1 months ago
AliWABA: alignment on the web through an A-Bruijn approach
Multiple sequence alignment programs are an invaluable tool in computational biology. A-Bruijn Alignment (ABA) is a method for multiple sequence alignment that represents an align...
Neil C. Jones, Degui Zhi, Benjamin J. Raphael
92
Voted
ACL
2010
14 years 12 months ago
Word Alignment with Synonym Regularization
We present a novel framework for word alignment that incorporates synonym knowledge collected from monolingual linguistic resources in a bilingual probabilistic model. Synonym inf...
Hiroyuki Shindo, Akinori Fujino, Masaaki Nagata
NAACL
2010
14 years 11 months ago
Word Alignment with Stochastic Bracketing Linear Inversion Transduction Grammar
The class of Linear Inversion Transduction Grammars (LITGs) is introduced, and used to induce a word alignment over a parallel corpus. We show that alignment via Stochastic Bracke...
Markus Saers, Joakim Nivre, Dekai Wu
95
Voted
BMCBI
2007
147views more  BMCBI 2007»
15 years 2 months ago
MaxAlign: maximizing usable data in an alignment
Background: The presence of gaps in an alignment of nucleotide or protein sequences is often an inconvenience for bioinformatical studies. In phylogenetic and other analyses, for ...
Rodrigo Gouveia-Oliveira, Peter Wad Sackett, Ander...
GCB
2004
Springer
139views Biometrics» more  GCB 2004»
15 years 7 months ago
Graph Alignments: A New Concept to Detect Conserved Regions in Protein Active Sites
: We introduce the novel concept of graph alignment, a generalization of graph isomorphism that is motivated by the commonly used multiple sequence alignments. Graph alignments and...
Nils Weskamp, Eyke Hüllermeier, Daniel Kuhn, ...