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» Alignment and Distribution is NOT (Always) NP-Hard
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ALMOB
2008
85views more  ALMOB 2008»
14 years 12 months ago
Noisy: Identification of problematic columns in multiple sequence alignments
Motivation: Sequence-based methods for phylogenetic reconstruction from (nucleic acid) sequence data are notoriously plagued by two effects: homoplasies and alignment errors. Larg...
Andreas W. M. Dress, Christoph Flamm, Guido Fritzs...
SEMWEB
2007
Springer
15 years 6 months ago
LILY: the Results for the Ontology Alignment Contest OAEI 2007
This paper presents the results of LILY, which is an ontology mapping system, for OAEI 2007 campaign. To accurately describe what the real meaning of an entity in the original onto...
Peng Wang, Baowen Xu
DASFAA
2005
IEEE
209views Database» more  DASFAA 2005»
15 years 5 months ago
PADS: Protein Structure Alignment Using Directional Shape Signatures
A novel approach for similarity search on the protein structure databases is proposed. PADS (Protein Alignment by Directional shape Signatures) incorporates the three dimensional ...
S. Alireza Aghili, Divyakant Agrawal, Amr El Abbad...
AAAI
2000
15 years 1 months ago
PROMPT: Algorithm and Tool for Automated Ontology Merging and Alignment
Researchers in the ontology-design field have developed the content for ontologies in many domain areas. Recently, ontologies have become increasingly common on the WorldWide Web ...
Natalya Fridman Noy, Mark A. Musen
WABI
2005
Springer
109views Bioinformatics» more  WABI 2005»
15 years 5 months ago
Optimal Protein Threading by Cost-Splitting
Abstract. In this paper, we use integer programming approach for solving a hard combinatorial optimization problem, namely protein threading. For this sequence-to-structure alignme...
Philippe Veber, Nicola Yanev, Rumen Andonov, Vince...